TCONS_00018966-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018966-protein
Unique NameTCONS_00018966-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018966-protein ID=TCONS_00018966-protein|Name=TCONS_00018966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MSLSKTFSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRAVDIHSRFDPAFA
FIEFDDSRDAEDAVYGEDGKRFDGNRIKVQFPRGTPRQAGASRSGRSSYT
RGRPSGERRGPPERTDHRITVSGLPASGSWQDLKDHMREAGEVVYADVYK
DGTAVCEFRSYDDMKWAIKNLDDTKFKSHENETAYITIKRDRPRRSRSRS
RTRSRSRSPRRSRSRSRSPKDRSRSPSRSPQRSRSRSPSRSRSRSRTP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010635XLOC_010635Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018966TCONS_00018966Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 118..184
e-value: 2.6E-4
score: 30.3
coord: 11..80
e-value: 4.3E-17
score: 72.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..180
e-value: 3.4E-11
score: 42.7
coord: 12..78
e-value: 1.4E-16
score: 60.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..84
score: 16.909
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 117..191
score: 10.531
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 10..185
NoneNo IPR availableGENE3D3.30.70.330coord: 2..99
e-value: 2.2E-21
score: 75.7
coord: 100..223
e-value: 2.1E-14
score: 53.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..248

Blast
[Close]
BLAST of TCONS_00018966-protein vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 8.826e-61
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 0 
Query:    8 SDSRIYVGNLPQFVRQRDLEDHFDRYGKVRAVDIHSR-FDPAFAFIEFDDSRDAEDAVYGEDGKRFDGNRIKVQFPRGTPRQAGASRSGRSSYTRGRPSGERRGPPERTDHRITVSGLPASGSWQDLKDHMREAGEVVYADVYKDGTAVCEFRSYDDMKWAIKNLDDTKFKSHENETAYITIKRDRP 193
            +D RIYVGNLP  +R +D+ED F +YG +R +D+ +R   P FAF+EF+D RDAEDAVYG DG  +DG R++V+FPR           G          G    P  R+++R+ VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF   +DM +A++ LD+TKF+SHE ETAYI +K D P
Sbjct:   14 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAP---RGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 197
The following BLAST results are available for this feature:
BLAST of TCONS_00018966-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF18.826e-6153.48Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
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