TCONS_00018939-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018939-protein
Unique NameTCONS_00018939-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018939-protein ID=TCONS_00018939-protein|Name=TCONS_00018939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MVRKRAQAEKALSPPRETSKADTDSRNNSASPEEIPRKRQKQEPESTDQN
GGQVKSPTYGIATTDETENSTNTSPDLLHDEYDQLPDPLTLQKELSDEGK
AFWETVTKDYHHFSNWTTLLQYITETEDNLEASQAVYRCFLRYFPYCYGY
WKKFADIEKRNSDMDAARKIFEDGLKAFPISVDLWVHYINFLMQQNKGKP
EKQQEIRDTFKRAVNSAGMEFKSSKLWNAFIEWENSQSNLKNVTEIYDQL
ICTPTQQYIKNWQKFKVHLETYRPGEILPAKEYGKLMKEMDAFPPGMVIE
DDKSGDEEGEVTLGEDEGLLKESYTEVRNRVLKDRESVFRQTAQEIVKRW
RFEESXGSLFFAKQLKKLSNAGGLRNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010616XLOC_010616Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018939TCONS_00018939Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR008847Suf
IPR011990TPR-like_helical_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 128..160
e-value: 1.6
score: 17.7
coord: 162..194
e-value: 1.4E-5
score: 34.6
coord: 201..236
e-value: 0.0029
score: 26.8
coord: 238..271
e-value: 190.0
score: 6.1
IPR008847Suppressor of forkedPFAMPF05843Sufcoord: 155..246
e-value: 7.9E-12
score: 45.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 101..269
e-value: 6.2E-19
score: 67.7
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 106..275

Blast
[Close]
BLAST of TCONS_00018939-protein vs. Swiss-Prot (Human)
Match: PRP39 (Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 8.031e-62
Identity = 118/317 (37.22%), Postives = 185/317 (58.36%), Query Frame = 0 
Query:   62 ATTDETENSTNTSPDLLHDEYDQLPDPLT-LQKELSDEGKAFWETVTKDYHHFSNWTTLLQYITETEDNLEASQAVYRCFLRYFPYCYGYWKKFADIEKRNSDMDAARKIFEDGLKAFPISVDLWVHYINFLMQQ-NKGKPEKQQEIRDTFKRAVNSAGMEFKSSKLWNAFIEWENSQSNLKNVTEIYDQLICTPTQQYIKNWQKFKVHLETYRPGEILPAKEYGKLMKEM--------DAFPPGMVIEDDKSGDEEGEVTLGEDEGLLKESYTEVRNRVLKDRESVFRQTAQEIVKRWRFEESXGSLFF-AKQLKK 367
            A+T+ETE ++             LP  LT  +     E + FW+TV  +   F+ W  LLQY+ E E++L A++  +  F  ++PYCYGYWKK+AD+EKR+ ++  + +++  GL+A P+SVDLW+HYINFL +  + G PE    IR TF+ AV +AG +F+S +LW  +I WEN Q NL+ VT IYD+++  PTQ Y  ++Q+FK H++   P ++L  +++ +L +E+        D  PPG   +D  SG E  ++T   D   L      +R+R+++  + +F     E+ KRW FEE     +F  K L+K
Sbjct:   53 ASTEETEMASAVD----------LPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYV-EQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPG---DDLPSGIE--DIT---DPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEK 350
The following BLAST results are available for this feature:
BLAST of TCONS_00018939-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP398.031e-6237.22Pre-mRNA-processing factor 39 OS=Homo sapiens GN=P... [more]
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