TCONS_00018932-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018932-protein
Unique Name	TCONS_00018932-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	521

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018932-protein ID=TCONS_00018932-protein|Name=TCONS_00018932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MSLADELLADLDDIEDEEVTANVEDDGDIQEIMETDDLQQQQDNSKSVSH
IARLRDSNEFKETLEKMNYYLENPRSRDTVMGPVEEDPEYKLIVTANNLT
AEIENETSIINKYCRDNYSKRFPELDSLVTNALEYIQTVQALGNDLDSNK
IDNLDFLPPATRMVVSVTAATTQGEQIGQNELDNINEACQMNMDLVDAKM
KIFQYVESRMSFIAPNVSVVIGASTAAKLMGIAGGLTNLSKMPSCNIMLL
GSQKKTLSGFSTASAQVLPHTGFIYYSDIVQGLPPYLRKKGARLASAKVT
LAARIDSFHENLDGSAGRKLLEEIEKKFDKLQEPPPVKDAKALPRPDDAP
RQKRGGKRVRKMKEKFAITEMRRQASRVTFGEISEDVYQQHVGFGIGSLA
KESASGKIRNPNVDKKTQVSISKRLQRNLANMNQSYGGKSTVRGQVSGTA
SSVAFTPLQGIEIVNPKAAEKRVQEANAKYFSNQTGFFRVKKKDQTNGES
ATKSSASSSSVTFAKPAPLNK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010612	XLOC_010612	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018932	TCONS_00018932	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012976	NOSIC
IPR019175	Prp31_C
IPR002687	Nop_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 491..521
IPR012976	NOSIC	SMART	SM00931	NOSIC_2	coord: 92..144 e-value: 5.8E-17 score: 72.4
IPR019175	Prp31 C-terminal	PFAM	PF09785	Prp31_C	coord: 338..466 e-value: 5.8E-41 score: 140.1
IPR002687	Nop domain	PFAM	PF01798	Nop	coord: 100..330 e-value: 8.1E-71 score: 238.0
IPR002687	Nop domain	PROSITE	PS51358	NOP	coord: 213..333 score: 38.893
IPR002687	Nop domain	SUPERFAMILY	89124	Nop domain	coord: 86..333

Blast

[Close]

BLAST of TCONS_00018932-protein vs. Swiss-Prot (Human)
Match: PRP31 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 281/465 (60.43%), Postives = 354/465 (76.13%), Query Frame = 0

Query:   29 IQEIMETDDLQQQQDNSKSVSHIARLRDSNEFKETLEKMNYYLENPRSRDTVMGPVEEDPEYKLIVTANNLTAEIENETSIINKYCRDNYSKRFPELDSLVTNALEYIQTVQALGNDLDSNKI-DNLD-FLPPATRMVVSVTAATTQGEQIGQNELDNINEACQMNMDLVDAKMKIFQYVESRMSFIAPNVSVVIGASTAAKLMGIAGGLTNLSKMPSCNIMLLGSQKKTLSGFSTASAQVLPHTGFIYYSDIVQGLPPYLRKKGARLASAKVTLAARIDSFHENLDGSAGRKLLEEIEKKFDKLQEPPPVKDAKALPRPDDAPRQKRGGKRVRKMKEKFAITEMRRQASRVTFGEISEDVYQQHVGFGIGSLAKESASGKIRNPNVDKKTQVSISKRLQRNLANMNQSYGGKSTVRGQVSGTASSVAFTPLQGIEIVNPKAAEKRVQEANAKYFSNQTGFFRVK 491
            I+++ E   L    D   SV  IA+L DS  F E + K+  Y+        VMGPVE  PEY++IV ANNLT EIENE +II+K+ RD YSKRFPEL+SLV NAL+YI+TV+ LGN LD  K  +NL   L  AT MVVSVTA+TTQG+Q+ + EL+ + EAC M ++L  +K +I++YVESRMSFIAPN+S++IGASTAAK+MG+AGGLTNLSKMP+CNIMLLG+Q+KTLSGFS+ S  VLPHTG+IY+SDIVQ LPP LR+K ARL +AK TLAAR+DSFHE+ +G  G +L +EIE+KFDK QEPPPVK  K LP P D  R+KRGG+R RKMKE+  +TE+R+QA+R++FGEI ED YQ+ +GF +G L K S SG++R   V++ T+  ISK LQR L   +  YGGKST+R + SGTASSVAFTPLQG+EIVNP+AAEK+V EAN KYFS+   F +VK
Sbjct:   32 IEDVQEETQLDLSGD---SVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTS--VLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGK-SGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVK 490

The following BLAST results are available for this feature:

BLAST of TCONS_00018932-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018932-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRP31	0.000e+0	60.43	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom...	[more]

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TCONS_00018932-protein (polypeptide) - C. hemisphaerica