TCONS_00018778-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018778-protein
Unique NameTCONS_00018778-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018778-protein ID=TCONS_00018778-protein|Name=TCONS_00018778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
LDQGILMTWGSGEDGCLGHGNTNDVSHARVVEDLVGSTVAQISCGSAHMM
ALTTEQQVFVWGRGSHGNFGLNDRHNRCNPTNVPLPMDTKPRSVVCGTDC
SFIITDKGAVYACGNNRNNKLALLTDNELKKGNFSKVENDCLVFKKVTCH
PICEHRIISIATGPTHSCFLTESGLLITCGANSSYQLGYERQENDLRPGI
VELSRQNPIHLMDCGDLHTVVVTSDDQIYSFGSSRHGRLGRRTDEDYTWK
PQLIEIEENDVTIQSLSVSHRTTLLAGKVHNASTLTPMNY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010515XLOC_010515Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018778TCONS_00018778Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 221..242
score: 29.55
coord: 163..181
score: 27.19
coord: 42..58
score: 32.35
coord: 4..20
score: 31.37
coord: 58..72
score: 31.11
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 174..222
e-value: 7.5E-6
score: 26.4
coord: 7..52
e-value: 4.0E-8
score: 33.7
coord: 57..104
e-value: 3.3E-9
score: 37.1
coord: 225..273
e-value: 3.6E-6
score: 27.4
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 56..107
score: 11.73
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 226..287
score: 9.017
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 174..225
score: 11.489
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 4..55
score: 12.896
NoneNo IPR availableGENE3D2.130.10.30coord: 142..280
e-value: 8.2E-28
score: 96.9
NoneNo IPR availableGENE3D2.130.10.30coord: 1..141
e-value: 1.1E-37
score: 129.2
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 3..274

Blast
[Close]
BLAST of TCONS_00018778-protein vs. Swiss-Prot (Human)
Match: NEK8 (Serine/threonine-protein kinase Nek8 OS=Homo sapiens GN=NEK8 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.007e-56
Identity = 109/280 (38.93%), Postives = 163/280 (58.21%), Query Frame = 0 
Query:    2 DQGILMTWGSGEDGCLGHGNTNDVSHARVVEDLVGSTVAQISCGSAHMMALTTEQQVFVWGRGSHGNFGLNDRHNRCNPTNVPLPMDTKPRSVVCGTDCSFIITDKGAVYACGNNRNNKLALLTDNELKKGN----FSKVENDCLVFKKVTCHPICEHRIISIATGPTHSCFLTESGLLITCGANSSYQLGYERQENDLRPGIVELSRQNPIHLMDCGDLHTVVVTSDDQIYSFGSSRHGRLGRRTDEDYTWKPQLIEIEE-NDVTIQSLSVSHRTTLLA 276
            D+GI+MT+GSG +GCLGHG+  D+S   +VE L+G  + Q++CG++H++AL+TE+++F WGRG  G  GL  R +   P  VP+P   + + VVCG D S I+T  G   ACG+NR NKL L   + L  G       +VE + L F  +   P+ +  ++SI  G  HS  +T SG   T G+N   QLG   +     P  V+      + ++ CGD  TV + ++ ++YS+G    GRLGRR DED    P+ ++++E +  T+ S+S  H  TLLA
Sbjct:  408 DRGIIMTFGSGSNGCLGHGSLTDISQPTIVEALLGYEMVQVACGASHVLALSTERELFAWGRGDSGRLGLGTRESHSCPQQVPMPPGQEAQRVVCGIDSSMILTVPGQALACGSNRFNKLGL---DHLSLGEEPVPHQQVE-EALSFTLLGSAPLDQEPLLSIDLGTAHSAAVTASGDCYTFGSNQHGQLGTNTRRGSRAPCKVQGLEGIKMAMVACGDAFTVAIGAESEVYSWGKGARGRLGRR-DEDAGL-PRPVQLDETHPYTVTSVSCCHGNTLLA 681
The following BLAST results are available for this feature:
BLAST of TCONS_00018778-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEK86.007e-5638.93Serine/threonine-protein kinase Nek8 OS=Homo sapie... [more]
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