TCONS_00018635-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018635-protein
Unique NameTCONS_00018635-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length128

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018635-protein ID=TCONS_00018635-protein|Name=TCONS_00018635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MAEATSQPMTGFFAVPVKTDCPHFKNALNNNVHPNTQEKCENCENIGENW
VCLTCCKVYCSRYVRSHMVQHNTGSRHPVALSFSDASVWCYTCDSYIDDP
VLRPICDSVANQSSTFVVGIQPSRNLWH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010416XLOC_010416Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018635TCONS_00018635Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 39..88
e-value: 1.3E-9
score: 48.0
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 40..100
e-value: 2.3E-19
score: 69.4
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 38..99
score: 16.924
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 17..117
e-value: 7.5E-24
score: 83.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 19..107

Blast
[Close]
BLAST of TCONS_00018635-protein vs. Swiss-Prot (Human)
Match: HDAC6 (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.069e-21
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 0 
Query:   12 FFAVPVKTDCPHFKNALNNNVHP------NTQEKCENCENIGENWVCLTCCKVYCSRYVRSHMVQHNTGSRHPVALSFSDASVWCYTCDSYIDDPVLRPICDSVANQS 113
            F+AV     CPH        V P      +  + C +C  I ENWVCL+C +VYC RY+  HM+QH+  S HP+ LS+ D S WCY C +Y+    L  +  ++A+Q+
Sbjct: 1104 FYAVTPLPWCPHLVA-----VCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDV-KNIAHQN 1205
The following BLAST results are available for this feature:
BLAST of TCONS_00018635-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC64.069e-2138.89Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=... [more]
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