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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00018575-protein ID=TCONS_00018575-protein|Name=TCONS_00018575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1001bp
MEDEKKNEKAELIPSGAKRKLSDSTESTEENDDDNYVKKITQEDEFWESE
DDDIDEEDEDDDDNDNDNDEEESKENEENDLCPICLGEFEDQMIGIPESC
KHTFCADCIEEWTKNVNNCPVDRKKFNMISVHLTKDGPVIKQIPVQDKTI
TMVFEEPPTYCEICHECDREEVLLLCDDCDNGYHADCLNPPLSSIPEEEW
FCPRCSPPNDQPSTSGAGRRTRSSSAVESVEDTSSTREESDDAMARRLMF
GQLRRPRTAARTVASNNRQRSESVNRTTNTRGRSTRGRGASTSAFSLRKK
KRISKKRNSASPKKKNKKKTKLELAREKKAIQKELERFREKKQKKKKNEV
KEVTKKLAVHGHSFDLDDFYDPDDENFCYDDQIEDKTPRSTLCDTTDVIG
NILGGFGTLNPENVTVLKDGTLKVNEKSKASANEKQSKVKKDKPEETCIV
IEPKRRTSSTSSTEMKEIVKKNKKRRKIRFLDEADEGNNISDNEVFDDPS
LDEKVPNALKKGYLEAMKKKKKEEELKKQIEEMKKFSTNLDDVNHQASSF
TVTKFKIPKKPKSEESDVIETKHKALSDSPKKPQNQTAGRKVKLENESPK
PLTMNPKFSPKNTKMIPKSIKLNGSITEGSKKTDMILSIISNAKQTMQQI
SNKTTRKQSGIKETASDQSERLANIVQERRQHVPEIRKKVLSLEEKVSLH
HAGKLKIKSPARRRSSDIDPNQPESFKLSMIQNNQLRSIIKVRAVPSCSS
HQNSLAPSNNSKSPKKPISLKDYQERKFIDDLFGETNDEGTKTKKSVTFR
EDVHSTALTSKENAKERDNPFGKLTLKPQSTKSLPKFTFSSTTSKAEPPP
VTNPWSKKLAENARTRPVGIVSPQQRVQPEDSSKNKDLCSSSTQGKKEHQ
SESNSETDTQTKERHQQPSRRPAPGKIKDPSSHPSSEEHIQQVKDFMKPL
FKSNKVNKEQWKSILREAVRKMKRHPSRYTNKEAFNAMMKDLVRDTLASH
P Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 513..546 |
| None | No IPR available | COILS | Coil | Coil | coord: 314..348 |
| None | No IPR available | GENE3D | 1.10.3050.10 | | coord: 934..1000
e-value: 5.2E-5
score: 23.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 558..615 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 701..725 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..79 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 804..941 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 206..325 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 749..771 |
| None | No IPR available | CDD | cd15536 | PHD_PHRF1 | coord: 160..205
e-value: 9.21411E-24
score: 95.1739 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 73..129 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 161..205
e-value: 0.48
score: 14.0
coord: 82..122
e-value: 9.4E-5
score: 31.8 |
| IPR001841 | Zinc finger, RING-type | PFAM | PF13639 | zf-RING_2 | coord: 81..123
e-value: 1.5E-9
score: 37.9 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 82..123
score: 12.534 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 82..121
e-value: 4.55037E-9
score: 52.8332 |
| IPR001965 | Zinc finger, PHD-type | SMART | SM00249 | PHD_3 | coord: 160..206
e-value: 1.7E-13
score: 60.9 |
| IPR019787 | Zinc finger, PHD-finger | PFAM | PF00628 | PHD | coord: 160..207
e-value: 4.2E-12
score: 45.7 |
| IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 158..208
score: 10.727 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 154..231
e-value: 1.6E-16
score: 59.3 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 17..136
e-value: 7.9E-17
score: 60.5 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 100..109 |
| IPR019786 | Zinc finger, PHD-type, conserved site | PROSITE | PS01359 | ZF_PHD_1 | coord: 161..205 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 156..207 |
Blast
BLAST of TCONS_00018575-protein vs. Swiss-Prot (Human)
Match: PHRF1 (PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3) HSP 1 Score: 177.178 bits (448), Expect = 5.352e-45 Identity = 98/257 (38.13%), Postives = 134/257 (52.14%), Query Frame = 0
Query: 43 EDEFWESEDDDIDEEDEDDDDNDNDND----------EEESKENEENDL--CPICLGEFEDQMIGIPESCKHTFCADCIEEWTKNVNNCPVDRKKFNMISVHLTKDGPVIKQIPVQDKTITMVFEEPPTYCEICHECDREEVLLLCDDCDNGYHADCLNPPLSSIPEEEWFCPRCSPPNDQPSTSGAGRRTRSSSAVESVEDTSSTREESDDAMAR-RLMFGQLR---RPRTAARTVASNNRQRSESVNRTTNTRGR 283
EDE E+D D +D ++D + E N ++D CPICL F DQ +G PE+C H FC DCI EW+KN N+CPVDR F I + G ++++IPV++ T EE PT+CE+C DRE+ LLLCD CD GYH +CL+PPL +P +EWFCP C+ P G + + S E+ S + +R R G+ R R R + R A+ NR R + R +T GR
Sbjct: 57 EDEGASEEEDLEDRSGSEDSEDDGETLLEVAGTQGKLEAAGSFNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQFGGKILRKIPVEN-TKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAP---------GVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIARTRQSERVRATVNRNRISTARRVQHTPGR 303
The following BLAST results are available for this feature:
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