TCONS_00018556-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018556-protein
Unique NameTCONS_00018556-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018556-protein ID=TCONS_00018556-protein|Name=TCONS_00018556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MKSLNKGSCMNGQPPWSPVVPYKNQLTLPSKERLSASTQDLRNGNMLKYY
DGYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTL
LGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPL
FAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDS
SQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNG
TLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSF
LNTIDLLAILPYFITLSINSENTTPLSVLRVVRLVRVFRIFKLSRHSLGL
RILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMNDQFQSIPDAF
WYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEF
FYKRDRMTFERSKYNTPSENQSKRQSPDQSPQSNHKENNINHNHNEDPLL
TTTVM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010378XLOC_010378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018556TCONS_00018556Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003972K_chnl_volt-dep_Kv1
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 195..211
score: 55.81
coord: 218..229
score: 76.22
coord: 118..128
score: 53.22
coord: 161..172
score: 23.17
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 433..444
score: 86.18
coord: 363..377
score: 58.33
coord: 339..347
score: 85.28
coord: 117..127
score: 43.56
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 363..386
score: 58.68
coord: 270..293
score: 48.37
coord: 393..415
score: 69.16
coord: 296..316
score: 54.54
coord: 334..360
score: 71.25
coord: 117..136
score: 48.3
coord: 422..448
score: 74.3
coord: 198..226
score: 48.42
NoneNo IPR availableGENE3D1.20.5.110coord: 414..448
e-value: 3.4E-13
score: 48.5
NoneNo IPR availableGENE3D1.10.287.70coord: 363..412
e-value: 3.9E-19
score: 68.0
NoneNo IPR availableGENE3D3.30.710.10coord: 74..175
e-value: 2.0E-14
score: 53.1
NoneNo IPR availableGENE3D1.20.120.350coord: 202..362
e-value: 2.3E-33
score: 114.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..505
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 260..449
coord: 200..229
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 77..164
e-value: 2.4E-21
score: 75.8
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 206..454
e-value: 1.1E-42
score: 145.9
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 76..169

Blast
[Close]
BLAST of TCONS_00018556-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 425.631 bits (1093), Expect = 3.617e-145
Identity = 228/475 (48.00%), Postives = 308/475 (64.84%), Query Frame = 0 
Query:   52 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPLSVLRVVRLVRVFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKY-------NTPSE-NQSKRQSPDQSPQSNHKE-----NNINHNHNEDPLLTT 502
            G+PQ+ +      E  E ++       IN+ G+ +ET   TL +FP+TLLGD  +   Y+   R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE      +++EGYI ++ER LP NE QR+VW LFE+P+SS  ARI+A  SV+VI++SI  FCLETLP +   N     +       +N T+    S S    +  P+F  E  CIIWFSFE+LVR  + PSK  F  + +N ID++AI+PYFITL              +    L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE    + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+    E+++Y         PS  +  K +S     +S++ E     NN N +  E+ L T 
Sbjct:   17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTA 480
The following BLAST results are available for this feature:
BLAST of TCONS_00018556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA23.617e-14548.00Potassium voltage-gated channel subfamily A member... [more]
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