TCONS_00018424-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018424-protein
Unique NameTCONS_00018424-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018424-protein ID=TCONS_00018424-protein|Name=TCONS_00018424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp
MANAEDVTNWLEAIESFEQNQHEDAILKFQSLTPTAKVMFNIGCCFLSSN
DCTRALQKLNHALTMDNHMAIAYFLQGELNFEEKKYAASYKSYDNAHQAM
RGKTFIDYRPLGLQHIMHEYQVIGNMLILARKYGIGDGIVHMNEQLQNNE
HIQHTMNSIRSGASVSIVKFLPITLFKPNKASIQNVNKKNYLGQAKVVST
ENTEEIYSTFSGKKMLEKGPSTPPIAARRPTQAAPDRRPTQTAPNRTPSP
RPRRISKHPDSFNSIKGSPPNPSFRPSFSQTPPLTKKAFPIRPAKSMENL
DQKPAPKTPPMRPVKPSDRKTSRSVEADLPNRISMIGSPPKKPLQPTFST
PAKPPRPSIPKQDDISSPRLPRNPPPPKPINKAQSLDTTNDNSKANMLER
NFSIKEKQLMRVLMGGMGGGSMMGGMGSGPTRKTSCEDTYLAPLEKETPK
APPAKPRPISMHPSSLSNNKPTTNIQMSLSGKPTKVPPGPPGKPSPPTQT
KPKPPVLNKFNTNNENNNTPSSPPKPTKKPINNNQPKPFNPKLQNNDNKP
NSFNAILDQLNQNSTQPKPFNRPSTNSNKSSSSPPKVFRQAINNNQPQSP
KPFKLPNNKPSETKPPIRPPVPQKHSPEAEELYATIDENPTNSYNDNNNN
TAKKAPPKPLPVSIEQPSVTEDAIYGNLFMPVSQNKRTAPPKKPLPKLTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010336XLOC_010336Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018424TCONS_00018424Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 367..384
score: 33.33
coord: 236..252
score: 43.53
coord: 304..325
score: 26.36
coord: 339..355
score: 44.71
coord: 438..463
score: 26.92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..664
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 70..103
e-value: 61.0
score: 8.0
coord: 36..69
e-value: 2.6
score: 17.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 1..269
e-value: 4.1E-10
score: 39.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 11..99
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 36..103
score: 10.069

Blast
[Close]
BLAST of TCONS_00018424-protein vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.201e-20
Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 0 
Query:    1 MANAEDVTNWLEAIESFEQNQHEDAILKFQSLT-PTAKVMFNIGCCFLSSNDCTRALQKLNHALTMDNHMAIAYFLQGELNFEEKKYAASYKSYDNAHQAMRGKTFIDYRPLGLQHIMHEYQVIGNMLILARKYGIGDGIVHMNEQLQ---------NNEHIQHTMNSIRSGASVSIVKFLPI-TLFKPNKASIQNVNKKNYLGQAKVVSTENTEEIYSTFS 211
            M+  E ++ W E + + ++   + A+  F ++  P +++ FNIGC +    + T A +    ++  D H+A+AYF +G L ++ +KY  + K    A   +RG   IDY+ LGLQ  +   +V+ N   +A  Y   +      EQL           +  I   M  +        V  +P+  LF+PN+  +  + KK+YLG+A VV++   ++ +S F+
Sbjct:    1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN---IAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPV-VIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFA 218
The following BLAST results are available for this feature:
BLAST of TCONS_00018424-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCF29.201e-2027.03Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF... [more]
back to top