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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00018416-protein ID=TCONS_00018416-protein|Name=TCONS_00018416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MDISSLNSKLLKLKQIHEEEINIMTGAERSYARIPFEPSNNEKFFISEIT
GTKTDKNDVRFYKVKWQQTWIPASRIRAWQDLIIQFWEGYHTSNDQKVME
IDSPCDQTPQVYVLTSDSESREELQVVAPSNSDKHERNTEQDNSSSVNFD
TYNDEENSDVDRTEDMYLDSEKISILGHKRMKILKQRQPRPLPPTSEPNE
HLPPPPPLQTPSTNDEEPPEPQYMDHERATQIKQEITTTVERERERERER
EDRREADHLYNPFTRLEGLPTHVPPEHRGFPMSMEKPLAATRDLYGSLNY
RLPSALSPNTGHRDPHELQVVSTYSVRRNSASPHNTHNTHGVYEENMPTH
KKTFFCYLCGKEYRSGTGLKQHLLAHKNEKPFGCNICQRRYRWKGDLNRH
MYTHLPNNELPLKCPECNKGFVRKDKMQLHINFAHGGGSSGTTGTPSATG
NTTEESKPFNIKPPLPLNNENNNGSNNHYGEEQPPAPLLPLSPVPP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 412..435
e-value: 0.0098
score: 25.1
coord: 354..376
e-value: 1.1
score: 18.2
coord: 382..404
e-value: 0.0016
score: 27.7 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 414..435 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 384..404 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 356..376 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 382..409
score: 9.785 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 412..440
score: 10.388 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 354..381
score: 12.695 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 352..404 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 391..437 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 413..435
e-value: 0.0044
score: 17.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 324..366
e-value: 2.9E-4
score: 20.3 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 38..95
e-value: 0.0064
score: 16.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 367..390
e-value: 1.2E-12
score: 47.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 421..479
e-value: 0.0014
score: 18.0 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 391..420
e-value: 7.5E-14
score: 51.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 434..496 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 115..165 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 188..257 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 42..88
e-value: 2.70219E-4
score: 38.0139 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 34..91 |
Blast
The following BLAST results are available for this feature:
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