TCONS_00018299-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018299-protein
Unique NameTCONS_00018299-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length165

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018299-protein ID=TCONS_00018299-protein|Name=TCONS_00018299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MGPKFDPNAISYVCLRAVGGEVGATSALAPKIGPLGLSPKKVGDDIAKNT
ADWKGLKITVKLTIQNRQAKISVVPSAASLIIKALKEPPRDRKKVKHVKH
DGNLTMDNIYDIAREMRERSLAKQFSGTVKEILGTAQSVGCTIDGDDPHS
IIEKINDGEIECPDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010272XLOC_010272Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018299TCONS_00018299Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR020785Ribosomal_L11_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 13..144
e-value: 7.6E-54
score: 194.9
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 9..145
score: 14.311
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 13..143
e-value: 7.79664E-49
score: 155.302
IPR020784Ribosomal protein L11, N-terminalGENE3D3.30.1550.10coord: 1..80
e-value: 3.2E-40
score: 135.7
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 14..69
e-value: 2.3E-23
score: 81.6
IPR020784Ribosomal protein L11, N-terminalSUPERFAMILY54747Ribosomal L11/L12e N-terminal domaincoord: 1..86
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 74..143
e-value: 9.5E-18
score: 64.4
IPR020783Ribosomal protein L11, C-terminalGENE3D1.10.10.250coord: 81..144
e-value: 1.8E-29
score: 101.3
IPR020783Ribosomal protein L11, C-terminalSUPERFAMILY46906Ribosomal protein L11, C-terminal domaincoord: 75..148
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 130..145

Blast
[Close]
BLAST of TCONS_00018299-protein vs. Swiss-Prot (Human)
Match: RL12 (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.755e-89
Identity = 124/163 (76.07%), Postives = 139/163 (85.28%), Query Frame = 0 
Query:    1 MGPKFDPNAISYVCLRAVGGEVGATSALAPKIGPLGLSPKKVGDDIAKNTADWKGLKITVKLTIQNRQAKISVVPSAASLIIKALKEPPRDRKKVKHVKHDGNLTMDNIYDIAREMRERSLAKQFSGTVKEILGTAQSVGCTIDGDDPHSIIEKINDGEIECP 163
            M PKFDPN I  V LR  GGEVGATSALAPKIGPLGLSPKKVGDDIAK T DWKGL+ITVKLTIQNRQA+I VVPSA++LIIKALKEPPRDRKK K++KH GN+T D I +IAR+MR RSLA++ SGT+KEILGTAQSVGC +DG  PH II+ IN G +ECP
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
The following BLAST results are available for this feature:
BLAST of TCONS_00018299-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL121.755e-8976.0760S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
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