TCONS_00018288-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018288-protein
Unique NameTCONS_00018288-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018288-protein ID=TCONS_00018288-protein|Name=TCONS_00018288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MVNKMEQLLNNKSMRELTPEEKWRQDHEKLHAKHRGHEAMHLEMVLILFA
TLFVMQIVLFKWQQMHSRSYKMVTLIGMWVFPFIFTVRHGWYRMISVWSI
FTIITLFVIWKATRFPVNPTTPRLVYKWFYNVHRVTYALGIIGYLIIMMT
FMGFNVLLLIKPEFSMQAGVIIIFYGLYYGVLGRDCAELCADKMAAKMGY
YSETGLPSKRLMPNICAVCGQELTLTAMEDMEEDDTEKSYKLSCGHLFHE
FCIRGWCIVGKKQTCPYCKEKVDLKRMFKNPWERPHILFGQLLDWLRYFI
VWLPVIILVTRGINYELGLE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010269XLOC_010269Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018288TCONS_00018288Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 216..268
e-value: 0.001
score: 28.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 216..269
score: 11.604
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 216..272
e-value: 3.91838E-6
score: 42.4328
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 203..288
e-value: 6.8E-16
score: 56.9
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 216..268
e-value: 4.2E-5
score: 23.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 210..281

Blast
[Close]
BLAST of TCONS_00018288-protein vs. Swiss-Prot (Human)
Match: RN121 (RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=1 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 2.367e-148
Identity = 189/315 (60.00%), Postives = 244/315 (77.46%), Query Frame = 0 
Query:    6 EQLLNNKSMRELTPEEKWRQDHEKLHAKHRGHEAMHLEMVLILFATLFVMQIVLFKWQQMHSRSYKMVTLIGMWVFPFIFTVRHGWYRMISVWSIFTIITLFVIWKATRFPVNPTTPRLVYKWFYNVHRVTYALGIIGYLIIMMTFMGFNVLLLIKPEFSMQAGVIIIFYGLYYGVLGRDCAELCADKMAAKMGYYSETGLPSKRLMPNICAVCGQELTLTAMEDMEEDDTEKSYKLSCGHLFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFKNPWERPHILFGQLLDWLRYFIVWLPVIILVTRGINYELGLE 320
            E+ L+   M +L+PEE+WR +H ++HAKHRGHEAMH EMVLIL ATL V Q++L +W+Q H RSY MVTL  MWV P  FTV+  W+R + +W +F+ +T FV ++ATR P+  TTPRLVYKWF  +++++YA GI+GY+ +M T  G N+L  IKPE +M  G+ ++FYGLYYGVL RD AE+CAD MA+ +G+YSE+G+P+K L  ++CAVCGQ++ +      EE   E +Y+LSC H+FHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF NPWERPH+++GQLLDWLRY + W PVII V +GINY LGLE
Sbjct:   16 ERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDV---SEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGVVQGINYILGLE 327
The following BLAST results are available for this feature:
BLAST of TCONS_00018288-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1212.367e-14860.00RING finger protein 121 OS=Homo sapiens GN=RNF121 ... [more]
back to top