LIM-domain protein prickle (polypeptide) - C. hemisphaerica

Overview
NameLIM-domain protein prickle
Unique NameTCONS_00018282-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length775

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018282-protein ID=TCONS_00018282-protein|Name=LIM-domain protein prickle|organism=Clytia hemisphaerica|type=polypeptide|length=775bp
MVSPSKKKEIATNRKSAKSTKEENVALSLIDHMKYCIRCGKMCPGYEGSE
WRKICRHCRCSREDHCLLPPTIQEKTYSISKFADQHPSSMGNDGDSGCST
EEYAWVPPGVSGELVNAYMNSLHEDKIPFVNSIGENYRAKQLLYQLPPHD
SDSKHCHNLSEEEKRELRSFHGRRRKDCLGRGNVRLFPNVAEGSSGVCQQ
CSKRIVPGEVVVHAWRAGKEACWHPACFQCTTCQELLVDLVYFYQEGRVY
CGRHHAELLKPRCSACDEIIFSDECTEAEGRFWHLGHFACYECDSSLGGQ
RYVMRDNHPICCVCFEKMFAEFCDSCGEPIGIDVGQMAHGSQHWHANEKC
FSCFNCGQTLLGQPFLPKNGEIFCSSGCSRGIPPPNPVNPKYPPRSASRN
RSYRPSSESSNNNSRDGYVSSSTMSPEPVRKIVEIRSKASYRSSLDKYGL
AAAEKIGDIVRNMPNGGVIKEESDEKDETSSTCSSVASSRAKELPSFPPS
NRHSKKPILRVPPKQRPKPTGPEIWIDMVPPKEATTHRKQEEDWEKQSVR
SMRSNRSTTSTKKYGDAMSHLNGNDTIERLVQGERQINRRHRRRKVDDSY
FSDYEVERRKRTQRRKQTPLVYQMDDEKPNIPLMTVKSRSTESLDAGKAR
VAGRRDERDGKKKRTKSETNLTNSKNYKSKNDAVANLRLNIDVNSPKKQS
YNKMELSKKATNKKTESNDSRKPARSFGMFSAEDQQMTRINYVTQDDMAM
DHRRNSKSPKKSKRKSKNQGQCVIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010268XLOC_010268Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018282TCONS_00018282Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR010442PET_domain
IPR033726LIM2_prickle
IPR033725LIM1_prickle
IPR033723PET_prickle
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 262..314
e-value: 6.4E-13
score: 58.9
coord: 322..377
e-value: 2.2E-6
score: 37.2
coord: 197..254
e-value: 2.4E-11
score: 53.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 198..257
e-value: 2.9E-11
score: 43.3
coord: 323..376
e-value: 9.7E-6
score: 25.6
coord: 263..319
e-value: 3.2E-8
score: 33.6
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 263..297
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 322..384
score: 6.93
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 196..260
score: 10.098
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 261..321
score: 12.722
NoneNo IPR availableGENE3D2.10.110.10coord: 325..772
e-value: 5.7E-13
score: 48.4
NoneNo IPR availableGENE3D2.10.110.10coord: 189..263
e-value: 3.3E-16
score: 58.6
NoneNo IPR availableGENE3D2.10.110.10coord: 264..324
e-value: 1.5E-16
score: 60.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 626..775
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..426
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 466..571
NoneNo IPR availableCDDcd09342LIM3_Testin_likecoord: 323..379
e-value: 3.26907E-29
score: 110.561
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 290..353
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 229..294
IPR010442PET domainPFAMPF06297PETcoord: 101..185
e-value: 4.4E-32
score: 110.1
IPR010442PET domainPROSITEPS51303PETcoord: 84..192
score: 33.6
IPR033726LIM2 prickleCDDcd09418LIM2_Pricklecoord: 261..316
e-value: 8.01852E-33
score: 120.61
IPR033725LIM1 prickleCDDcd09415LIM1_Pricklecoord: 198..256
e-value: 7.13906E-34
score: 123.521
IPR033723PET prickleCDDcd09827PET_Pricklecoord: 92..188
e-value: 6.05734E-53
score: 177.546

Blast
[Close]
BLAST of LIM-domain protein prickle vs. Swiss-Prot (Human)
Match: PRIC3 (Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3 PE=1 SV=2)

HSP 1 Score: 424.476 bits (1090), Expect = 2.433e-139
Identity = 217/430 (50.47%), Postives = 287/430 (66.74%), Query Frame = 0 
Query:   31 DHMKYCIRCGKMCPGYEGSEWRKICRHCRCSREDHCLLPPTIQEKTYSISKFADQHPSSMGNDGDSGCSTEEYAWVPPGVSGELVNAYMNSLHEDKIPFVNSIGENYRAKQLLYQLPPHDSDSKHCHNLSEEEKRELRSFHGRRRKDCLGRGNVRLFPNVAEGSSGVCQQCSKRIVPGEVVVHAWRAGKEACWHPACFQCTTCQELLVDLVYFYQEGRVYCGRHHAELLKPRCSACDEIIFSDECTEAEGRFWHLGHFACYECDSSLGGQRYVMRDNHPICCVCFEKMFAEFCDSCGEPIGIDVGQMAHGSQHWHANEKCFSCFNCGQTLLGQPFLPKNGEIFCSSGCSRGIPPPNP--------VNPKYPPRSASRN--RSYRPSSESSNNNSRDGYVSSSTMSPEPVRKIVEIRSKASYRSSLDKYGL 450
            D  + C  C + CPG+    WRKIC+HC+C RE+H +    +  +       +D    S+ +D DSGC++EEYAWVPPG+  E V  + + L EDK+P+VNS GE YR KQLL+QLPPHDS++++C  L EEEK+ELR+F  +R+++ LGRG VR+FP    G+  +C++C K+I  G++ V A RAG  ACWHP CF CTTCQELLVDL+YFY  G+VYCGRHHAE L+PRC ACDEIIFS ECTEAEGR WH+ HF C+EC++SLGGQRYVMR + P CC C+E   AE+CD CGE IG+D GQMA+  QHWHA+++CF C  CG+ LLG+PFLP+ G IFCS  CS G  P  P          P   P +AS     + + +SE++   +    ++ +T   EP R +      A +R S+ + GL
Sbjct:   22 DRGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDD-DSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGIVRIFPVTITGA--ICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGSEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTST-ELAPATGPEEPSRFL----RGAPHRHSMPELGL 443
The following BLAST results are available for this feature:
BLAST of LIM-domain protein prickle vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRIC32.433e-13950.47Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3... [more]
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