TCONS_00018041-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018041-protein
Unique NameTCONS_00018041-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018041-protein ID=TCONS_00018041-protein|Name=TCONS_00018041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MSLCWRFSAAILSRLIFVFHSVWSLREILQRIYVDDAVSVKESKYWLLTL
ILALIVLEGAYTVIIRKGHEYKYFWPSGFIYILIMIPNTCILESFLMDEE
IKCTALWEQQNLNPKLQYDGEQTRLCLAAKSKMKDDQKLRAAIEIGMLGA
LVMGRWLLPRGELTRDQLSALLLAFIGNGADCIEFLNTWNDFPDLRNRQV
TDTVLVLYSVSILQFAVVTTKTTDEYKEEITEDDQNLFGEETRTRTDTNG
NLKPVRTSASGVPRYIRKLMKQKSKTRASYHATLSSVTLALKDERSNTLS
MPTSPQRCSSYEFRTRAFTLESKLMDDNVFEDDHSITRSQIPQIPRRKQG
TFLSDAVKSDDQKRSKKIRFRADTNLSTNERESKETARYLQTLAHYGRWD
EFSKVLKQAKSSGFNRNSVRFSSTTEQLDDDVNNNETEQTKQNRLADFLQ
RIPKLKSMNLVDQDFFQTFFLLTTLELPYFIARVVFTVKYNVSSTTMVFY
TTKNVVMIIFLLYRLWVKFSADLDSADREETDENGDYSRDLMNVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010115XLOC_010115Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018041TCONS_00018041Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019169Transmembrane_26
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019169Transmembrane protein 26PFAMPF09772Tmem26coord: 453..514
e-value: 2.6E-6
score: 26.9
coord: 7..234
e-value: 3.3E-52
score: 177.5

Blast
[Close]
BLAST of TCONS_00018041-protein vs. Swiss-Prot (Human)
Match: TMM26 (Transmembrane protein 26 OS=Homo sapiens GN=TMEM26 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.517e-19
Identity = 77/233 (33.05%), Postives = 122/233 (52.36%), Query Frame = 0 
Query:    7 FSAAILSRLIFVFHS---VWSLREILQRIYVDDAVSVKESKYWLLTLILALIVLEGAYTVIIRKGHEYKYFWPSGFIYILIMIPNTCILESFLMDEEIKCTALWEQQNLNPKLQYDGEQTRLCLAAKSKMKDDQKLRAAI----------EIGMLG-------ALVMGRWLLP-RGELTRDQLSALLLAFIGNGADCIEFLNTWNDFPDLRNR-QVTDTVLVLYSVSILQFAV 217
            F  A+ +RL+F+ HS   VW + E+            KE +YWLL L+  L+ LE A T+  ++G  YK+F P+ F+Y++ ++P+  +LE  L  E   C+   E  + N   + D  QT L    ++   DD    A +          ++  LG        L++GRWLLP  G +TRDQLS LLL F+G  AD +EF +   +  ++RN   +   +LV+++ S+LQF +
Sbjct:    6 FLNALATRLLFLLHSLVGVWRVTEV-----------KKEPRYWLLALLNLLLFLETALTLKFKRGRGYKWFSPAIFLYLISIVPSLWLLE--LHHETQYCSIQAEGTSQNTSRKEDFNQT-LTSNEQTSRADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLMFVGTAADILEFTSETLEEQNVRNSPALVYAILVIWTWSMLQFPL 224
The following BLAST results are available for this feature:
BLAST of TCONS_00018041-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMM269.517e-1933.05Transmembrane protein 26 OS=Homo sapiens GN=TMEM26... [more]
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