TCONS_00018022-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018022-protein
Unique NameTCONS_00018022-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length113

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018022-protein ID=TCONS_00018022-protein|Name=TCONS_00018022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MNLFDKDTILMGHSLESDLKALKIIHRRVIDTALVFPHRLGLPFKRALKT
LMAELLQKIIQDGEGGHDSCEDARSCMELMKYKFNEDAKAANRGSHKHIS
SSSFYTKAPLMKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010098XLOC_010098Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018022TCONS_00018022Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..105
e-value: 6.0E-13
score: 48.5
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 5..84

Blast
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BLAST of TCONS_00018022-protein vs. Swiss-Prot (Human)
Match: REXO1 (RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.283e-33
Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:    1 MNLFDKDTILMGHSLESDLKALKIIHRRVIDTALVFPHRLGLPFKRALKTLMAELLQKIIQDGEGGHDSCEDARSCMELMKYKFNEDAK 89
            +++F  DTIL+GHSLESDL ALK+IH  V+DT+++FPHRLGLP+KR+L+ LMA+ L++IIQD   GH S EDA +CM L+ +K  EDAK
Sbjct: 1130 LSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKVREDAK 1218
The following BLAST results are available for this feature:
BLAST of TCONS_00018022-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REXO13.283e-3360.67RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1... [more]
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