TCONS_00017969-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017969-protein
Unique NameTCONS_00017969-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017969-protein ID=TCONS_00017969-protein|Name=TCONS_00017969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
SRHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVY
MAHIGSFVPAVSAKISIKSGIYTRXDEFGKGTSATDGLALLASVLQFWSD
ENNQRPMVLVSTHFHQIRKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKE
GYVEYSYAAHVARSVGIQADIVQRAKEITDCILKEQPIAKKNHPYKQREE
EELIKIADEFLTMDLSDENVIGLFIRRLCEEINEASATEVEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010078XLOC_010078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017969TCONS_00017969Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000432DNA_mismatch_repair_MutS_C
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0030983mismatched DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 25..180
e-value: 4.5E-34
score: 129.2
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 76..180
e-value: 5.9E-17
score: 62.3
coord: 29..74
e-value: 1.3E-16
score: 61.1
NoneNo IPR availableGENE3D3.40.50.300coord: 75..185
e-value: 1.3E-9
score: 37.2
coord: 2..72
e-value: 9.5E-8
score: 31.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..180

Blast
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BLAST of TCONS_00017969-protein vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.932e-46
Identity = 89/256 (34.77%), Postives = 135/256 (52.73%), Query Frame = 0 
Query:    2 RHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVYMAHIGSFVPAVSAKISIKSGIYTRX-----------------------------------DEFGKGTSATDGLALLASVLQFWSDENNQRPMVLVSTHFHQI--RKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKEGYVEYSYAAHVARSVGIQADIVQRAKEITDCILKEQPIAKKNHPYKQREEEELIKIADEFLTMDLSDENV 220
            RH L ELC   FV N++    ++G+++++TGPN+SGKS+Y+KQVGLI +MA +GSFVPA  A+I     I+TR                                    DEFGKGT+  DGLALLA+VL+ W       P + V+T+F  +   + +     V+Y T++    +  +LVF Y + EG  + S+A+H A   G+   +V R KE++D I   +PI       K+ + E    + D+F+ +DL D N+
Sbjct:  562 RHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCE-DGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNL 816
The following BLAST results are available for this feature:
BLAST of TCONS_00017969-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH54.932e-4634.77MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=... [more]
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