TCONS_00017964-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017964-protein
Unique NameTCONS_00017964-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017964-protein ID=TCONS_00017964-protein|Name=TCONS_00017964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MSSARNQSVTSSGPGATWSAKSCSSNERSVHGFYTNTNSTVSAPSTSRPG
IDESVLQCPAEGGKNQVSFDGDLSNIENPDVFLSLYMVNQKLGACYYDSD
VQILYVMKDIIEDNNFTMLKKLLLQVLPTVILVSTKQKEEFIECIKNLGE
VQGKEESQERWNVELCPANTFNYDMAKRKILSMSGLPGLTDQMDDEDRHL
YFSSRIAFEDTNMICSVGSLLRHLDRVRPGVELETDTPVPILFMKIFALD
DVMSVDEYTYSSLQIFQREFHPSVYKAGGTKEGLSLFGILNGTKSQQGHQ
LLKIWFLRPSTNLQTLEERQKCINFFAQTRNMEALNTLQDCLKNTKNIMR
ILGKMKSCGINVRDWQHLYKTIFHAICIGDICKGLSKDMHIIQEINETFS
KELLSLGNLIKHIIDFEESAFLQHFVVKTGVDEELDERKRTFDGIPNLMT
KVAQSELSKLNRSITKCSVTYLPQLGYLLNLPLTDDMKEAGNYYIDPLLE
FKFMADEVVYYKSAGTQELDDQLGDLQCDIRDQETQIMHRLQDTILQYSE
VLHKVIQLSAELDW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010075XLOC_010075Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017964TCONS_00017964Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
IPR007860DNA_mmatch_repair_MutS_con_dom
IPR007861DNA_mismatch_repair_MutS_clamp
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 516..536
NoneNo IPR availableGENE3D1.10.1420.10coord: 252..410
e-value: 5.2E-29
score: 100.8
NoneNo IPR availableGENE3D1.10.1420.10coord: 411..545
e-value: 4.8E-26
score: 90.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR007696DNA mismatch repair protein MutS, coreSMARTSM00533DNAendcoord: 281..563
e-value: 5.9E-8
score: 42.4
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 259..563
e-value: 1.6E-26
score: 93.6
IPR007696DNA mismatch repair protein MutS, coreSUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 256..563
IPR007860DNA mismatch repair protein MutS, connector domainGENE3D3.30.420.110coord: 65..233
e-value: 1.5E-7
score: 31.0
IPR007861DNA mismatch repair protein MutS, clampPFAMPF05190MutS_IVcoord: 430..528
e-value: 9.2E-7
score: 29.0

Blast
[Close]
BLAST of TCONS_00017964-protein vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.163e-104
Identity = 193/525 (36.76%), Postives = 303/525 (57.71%), Query Frame = 0 
Query:   44 PSTSRPGIDESVLQCPAE-GGKNQVSFDGDLSNIENPDVFLSLYMVNQKLGACYYDSDVQILYVMKDIIEDNNFTMLKKLLLQVLPTVILVSTKQKEEFIECIKNLGEVQGKEESQERWNVELCPANTFNYDMAKRKILS--MSGLPGLTDQMDDEDRHLYFSSRIAFEDTNMICSVGSLLRHLDRVRPGVELET-DTPVPILFMKIFALDDVMSVDEYTYSSLQIFQREFHPSVYK-AGGTKEGLSLFGILNGTKSQQGHQLLKIWFLRPSTNLQTLEERQKCINFFAQTRNMEALNTLQDCLKNTKNIMRILGKMKSCGINVRDWQHLYKTIFHAICIGDICKGLSKDMHIIQEINETFSKELLSLGNLIKHIIDFEESAFLQHFVVKTGVDEELDERKRTFDGIPNLMTKVAQSELSKLNRSITKCSVTYLPQLGYLLNLPLTDDMKEAGNYYIDPLLEFKFMADEVVYYKSAGTQELDDQLGDLQCDIRDQETQIMHRLQDTILQYSEVLHKVIQLSAELD 563
            P   RPG   S    PA   G  +   +      E  ++ L +   +  LG  YYD+    ++ M D  +  +  +L+++L ++ P  ++ S KQ E     +  L   + +E   +R  +   P+  F  +++K+++LS   S +P   D M   ++ L+ SS I F+    + ++G LL+ L R R GVELE  +  VPIL  K F L  ++++D+ TYS LQIF+ E HPSVYK A G KEGLSLFGILN    + G +LL++WF RP+ +L  L  R   I FF   +N++    L   L + KN+  IL +MK     V DWQ LYKT++ A+ + D C+ L + + + ++I + FS +L  + +LI  ++DFE S     F V   +D E+DE+KR   G+P+ +T+VA+ EL  L+  I  CSV Y+P +G+LL++P    M EA ++ I+  L+F F+++E ++Y+SA T+ELD  LGDL C+IRDQET +M++LQ  +L  + VL +V+ L++ LD
Sbjct:   12 PQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREP--KRPEIIFLPSVDFGLEISKQRLLSGNYSFIP---DAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEING-LDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLD 530
The following BLAST results are available for this feature:
BLAST of TCONS_00017964-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH51.163e-10436.76MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=... [more]
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