TCONS_00017953-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017953-protein
Unique Name	TCONS_00017953-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	450

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017953-protein ID=TCONS_00017953-protein|Name=TCONS_00017953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
VNMSDKEELVIKTSSSDNNSSFHGNCLDKECPIKNNIQRCKKINLTPDQE
KKQWLLRLSGRENTKDKNSAVNGNTSTKPSRIDTDETHLIDSNLEIIDNP
SFLKESPGDTQRTTTTGELSNRLVGERKSKPSKGSLEFTDTSNTIQSPSK
KNLSQRLKAMRESLNLSFENGGSSTNQRNRSILNSSTFSSTNTSFSTSFD
SSLYIDQSTNSASSPDSIFEQFYKTFRDDVIRKELKLLSQHHQDGVYVMP
SINSLQVWFGVIFIRHGPYENGIFHFTVFFKDDFPESIPIIRFRSRVFHP
QIEIRKGTFNVRLETDAHKNRIHVWELLKHLRSSFYQLDVNDCMNKHAAD
MFRTNRTGFVTECRNCVQRSIDSYHRQGAEEEFSNIIENPLKSRLVEDDF
FKGFIKFLVANARNNQYGSSLTNAIGWAKNQLGRVLNNLNTSYSMMGNDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010065	XLOC_010065	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017953	TCONS_00017953	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD
IPR000608	UBQ-conjugat_E2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 229..372 e-value: 1.0E-9 score: 48.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..153
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 147..399 e-value: 7.6E-31 score: 106.9
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 226..371
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 231..365 e-value: 2.0E-19 score: 69.5
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 229..361 score: 16.503

Blast

[Close]

BLAST of TCONS_00017953-protein vs. Swiss-Prot (Human)
Match: AKTIP (AKT-interacting protein OS=Homo sapiens GN=AKTIP PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.992e-25
Identity = 58/183 (31.69%), Postives = 93/183 (50.82%), Query Frame = 0

Query:  202 SLYIDQSTNSASSPDSI------FEQFYKTFRDDVIRKELKLLSQHHQDGVYVMPSINSLQVWFGVIFIRHGPYENGIFHFTVFFKDDFPES-IPIIRFRSRVFHPQIEIRKGTFNV-RLETDAHKNRIHVWELLKHLRSSFYQLDVNDCMNKHAADMFRTN----RTGFVTECRNCVQRSID 372
            +L I + T+ A +  S       +  FY  +    +  E  L+ +    GVYV PS  S  +WFGVIFIRHG Y++G+F FTV+  D++P+   P + F   VFHP ++   G  +V R      +N  H+W++L + R  FY++D    +N  AA ++  +    ++  V   + C  R  D
Sbjct:   47 ALPITKPTSPAPAAQSTNGTHASYGPFYLEYS---LLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFD 226

The following BLAST results are available for this feature:

BLAST of TCONS_00017953-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017953-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AKTIP	3.992e-25	31.69	AKT-interacting protein OS=Homo sapiens GN=AKTIP P...	[more]

You are here

TCONS_00017953-protein (polypeptide) - C. hemisphaerica