TCONS_00017940-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017940-protein
Unique NameTCONS_00017940-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017940-protein ID=TCONS_00017940-protein|Name=TCONS_00017940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=803bp
MQHGKNLVSDYLMHCVQYQSIISLEGVDIRGSIGATMRTRYFLSNSVTLW
KMAKVVLGFILVIIVLINLNISLVSRTYTHKSLTSIEVTSNEGAAAGGGG
VGGGRESNHERKLVLAELAEYYEKLLQQKGVDTNAIKQAMQQNSGKVFNV
FNDPPKAKLTNTATDKPLIKESQPKSEVPNKAKTTFASYLQKRISTLPGD
NKIRYDELGEKNVYKGLIVDWWFDMCVIRESSDPIWHPLYPRVPQHTSIS
LRLMDQDRILDGSSRRVYGYLFVKDDQAYDFKLSSRDGAEVLLYDTGVSM
KKIQLLNNDIKYDKSKEMMHLKLTKDVMDEQDKKIQLSEMFQLQEKNVNL
KGDRVYMIEVFQGGKYFTKYSLKWRKSGDDSVGFTTLDDKNLFFKDGMKG
RLTPSLLKQKYNPPNLQPMSDGESRRLSFYKYSVLESNEKARKAGMTCDE
VQKDYKIITHLYEGYRRYTYNILSYPDEYFKYGLVPRWTSLSKEEAIASA
NQLFKKLNKLHNGDLELVSLAHVQRNAGPQAQRFHENDKTHYFIELDVRK
KSDSSKKIYRASHFMQPTDEGDLCFMKEWNTGKKDVEVNLLTPIKNQKSW
LNYMILMLEEIMEQTKETNVILNLIDYNSTDGNYEQILKSSKLKYKYLNP
VRDTDKLDKEPVKFNKVKALNYGIKHVENENSIIFILDLHLQLPLNIFDR
IKKMTVQGRTSYNPTLLKLACGEHEEYTKLEKSEWLDYGTGMMAMYKNDW
EEIGCYNEKLFGTKWGGEDWEVMDRMVAKGYYIVHQRLPRFYHLHHGRAG
MWI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010054XLOC_010054Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017940TCONS_00017940Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR008428Chond_GalNAc
Vocabulary: Molecular Function
TermDefinition
GO:0008376acetylgalactosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0032580Golgi cisterna membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032580 Golgi cisterna membrane
molecular_function GO:0008376 acetylgalactosaminyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 530..803
e-value: 2.8E-16
score: 59.1
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 659..802
coord: 588..627
NoneNo IPR availableGENE3D3.90.182.10coord: 233..450
e-value: 4.2E-4
score: 19.5
IPR008428Chondroitin N-acetylgalactosaminyltransferasePFAMPF05679CHGNcoord: 540..783
e-value: 3.7E-13
score: 49.0

Blast
[Close]
BLAST of TCONS_00017940-protein vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.022e-41
Identity = 91/337 (27.00%), Postives = 167/337 (49.55%), Query Frame = 0 
Query:  491 LSKEEAIASANQLFKKLNKLHNGDLELVSLAHVQRNAGPQAQRFHENDKTHYFIELDVRKK----------------------SDSSKKIYRASHFMQPTDEGDLC--FMKEWNTGKKDVEVNLLTPIKNQKSWLNYMILMLEEIMEQTKETNVILNLIDYNSTDGNYEQILKSSKL-KYKYLNPVRDTDKLDKEPVKFNKVKALNYGIKHVENENSIIFILDLHLQLPLNIFDRIKKMTVQGRTSYNPTLLKLACGEHEEYTKLEKSEWLDYGTGMMAMYKNDWEEIGCYNEKLFGTKWGGEDWEVMDRMVAKGYYIVHQRLPRFYHLHHGRAGMW 802
            L + EA+    Q  ++LN  H G   L+ + +V++       R      + + +EL+++++                      +D        +  ++P    +LC      W   ++DV V+ + P+KNQ  W+   +  +  +  +T ++   + L+D+ S D + E+ L++++L +Y+YL   R T         F +   L  G+  VE+ +SI+F+ DLH+  P NI D I+K  V+GR ++ P +++L+CG      +     W   G G+  +YK+D++ +G  N + F  +WGGEDWE++DR++  G  +   RL  FYH +H + GMW
Sbjct:  713 LPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEK-------RRDSARGSRFLLELELQERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAW---RQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYL---RRTGN-------FERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSS---PRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026
The following BLAST results are available for this feature:
BLAST of TCONS_00017940-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN42.022e-4127.00N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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