TCONS_00017627-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017627-protein
Unique NameTCONS_00017627-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017627-protein ID=TCONS_00017627-protein|Name=TCONS_00017627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MSRQGTPQRPNGGAPQGKIQPFKLVLLGESAVGKSSLVLRFVKGQFHEYQ
ESTIGAAFLTQTVCFDDTTVKFEIWDTAGQERYHSLAPMYYRGSQAAIVV
YDITNPESFTRAKNWVKELHRQASANIVISLAGNKADLGNKRMVEYDEAQ
AYAEENGLLFMETSAKTAMNVNDLFLAIAKKLPKNTDSQGGGGQRAGGPG
IALNEQTEQQKSGCCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009848XLOC_009848Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017627TCONS_00017627Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 22..43
score: 49.92
coord: 160..182
score: 41.55
coord: 63..85
score: 48.33
coord: 125..138
score: 48.88
coord: 45..61
score: 31.09
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 24..184
e-value: 3.6E-11
score: 23.5
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 22..185
e-value: 4.0E-91
score: 318.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 19..185
e-value: 6.2E-33
score: 125.4
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 27..216
e-value: 8.7E-6
score: 32.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 20..85
e-value: 3.9E-27
score: 93.6
NoneNo IPR availableGENE3D3.40.50.300coord: 86..183
e-value: 1.0E-38
score: 131.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..216
NoneNo IPR availablePROSITEPS51419RABcoord: 16..216
score: 33.355
NoneNo IPR availableCDDcd01860Rab5_relatedcoord: 22..183
e-value: 5.76359E-121
score: 342.224
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 20..175
e-value: 2.4E-30
score: 103.4
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 23..182
e-value: 5.1E-62
score: 208.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 21..186

Blast
[Close]
BLAST of TCONS_00017627-protein vs. Swiss-Prot (Human)
Match: RAB5B (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 2.540e-120
Identity = 165/207 (79.71%), Postives = 179/207 (86.47%), Query Frame = 0 
Query:    9 RPNGGAPQGKIQPFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCFDDTTVKFEIWDTAGQERYHSLAPMYYRGSQAAIVVYDITNPESFTRAKNWVKELHRQASANIVISLAGNKADLGNKRMVEYDEAQAYAEENGLLFMETSAKTAMNVNDLFLAIAKKLPKNTDSQGGGGQRAGGPGIALNEQTEQQKSGCC 215
            RPNG     KI  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ+VC DDTTVKFEIWDTAGQERYHSLAPMYYRG+QAAIVVYDITN E+F RAK WVKEL RQAS +IVI+LAGNKADL NKRMVEY+EAQAYA++N LLFMETSAKTAMNVNDLFLAIAKKLPK ++ Q  GG      G+ L+EQ++Q KS CC
Sbjct:    8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK-SEPQNLGGAAGRSRGVDLHEQSQQNKSQCC 213
The following BLAST results are available for this feature:
BLAST of TCONS_00017627-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB5B2.540e-12079.71Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
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