Echinoderm microtubule-associated protein family (polypeptide) - C. hemisphaerica

Overview
NameEchinoderm microtubule-associated protein family
Unique NameTCONS_00017625-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017625-protein ID=TCONS_00017625-protein|Name=Echinoderm microtubule-associated protein family|organism=Clytia hemisphaerica|type=polypeptide|length=767bp
KIINLKSFFQAGNRLSSSSSPTTNGTIKPINRARTSSTPSSPRGSPPNGS
QTPVKKRTVSKSISAKNNANRKSASDLPSPSPSSGTNSNGTNELPADNGK
PKLILAPKRTAPKRRPLSSSGSLSDDNKENVVDETVKFYIRGRGLRLYRP
TEYKETNPDGKAPEEQLKLDWVYGYRGKDCRDNLFIVPATGELVYNMAGV
VVLYDQKTNKQRHYTEHNDDVKCIALHPKNTLIASGQVAGHGDDAKPHVR
VWDASTLETKAVLGSGVFERGLCALEFSNATGQYLVCIDESNDHVAYLYD
WEKNQKLTEANTSKEALFSLKWQPNTDNAFMTYGKSHIGFWKINNENGTT
ALTRRNGVFDKIAKPKYVICATYSPNGSVIAGDSNGNIVWFNEGTSKVSK
AEQNIHKGGVFSLTYVESKDEYISGGKDNIFIAWNNQLERVREIGSLSDQ
YGPPRCCVYDVTSEQFLIGTSKNCIIQVKADWSEEKALVQGHSDEMWGLA
AHASKPIFVTCSHENLVCVWNGEKQELIWSYFIEDGAQCAELHPSEPFVL
VGTKNGTLYVLNYETKEELVTVPVSRDCIDDVKVSPNSKYLAAACRDSNI
YLYNWPKEVTSFKKPKVLQGHSSRVLHLDWCTDGEFMQSNSGDYEVLFWH
AESGCQVLTPAALRDTEWSTYTCPFGFPVMGIWPEGADGTDINTCCRSNN
KKLVATGDDFGAVNLFKYPSVKLKSEASIGVGHSSHVTCVRFLHDDSSLI
TVGGLDSSIMQWKMVKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009847XLOC_009847Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017625TCONS_00017625Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR005108HELP
IPR0110426-blade_b-propeller_TolB-like
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 611..650
e-value: 0.0074
score: 25.5
coord: 722..763
e-value: 0.0037
score: 26.5
coord: 396..435
e-value: 6.5
score: 11.9
coord: 565..604
e-value: 0.0031
score: 26.8
coord: 481..521
e-value: 0.15
score: 21.1
coord: 524..562
e-value: 31.0
score: 7.6
coord: 207..253
e-value: 0.024
score: 23.8
coord: 352..392
e-value: 110.0
score: 4.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 579..604
e-value: 0.25
score: 12.2
coord: 731..763
e-value: 0.0051
score: 17.5
coord: 209..253
e-value: 2.9E-5
score: 24.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 489..530
score: 8.537
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 618..659
score: 10.876
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 730..767
score: 9.64
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 375..612
e-value: 1.6E-36
score: 125.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 613..766
e-value: 1.9E-15
score: 56.1
IPR005108HELPPFAMPF03451HELPcoord: 135..205
e-value: 1.2E-25
score: 89.0
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 197..374
e-value: 3.7E-19
score: 68.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..128
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 730..767
score: 9.467
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 403..659
score: 17.192
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 677..764
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 193..443
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 365..650

Blast
[Close]
BLAST of Echinoderm microtubule-associated protein family vs. Swiss-Prot (Human)
Match: EMAL1 (Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens GN=EML1 PE=1 SV=3)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 300/739 (40.60%), Postives = 440/739 (59.54%), Query Frame = 0 
Query:   39 PSSPRGSPPNGSQTPVKKRTVSKSISAKNNANRKSASDLPSPSPSSGTN--SNGTNELPADNGKPKLILAPKRTAPKRRPLSSSGSLSDDNKENVVDETVKFYIRGRGLRLYRPTEYKET---NPDGKAPEEQLKLDWVYGYRGKDCRDNLFIVPATGELVYNMAGVVVLYDQKTNKQRHYTEHNDDVKCIALHPKNTLIASGQVAGHGDDAK---PHVRVWDASTLETKAVLGSGVFERGLCALEFSNATGQYLVC-IDESNDHVAYLYDWEKNQKLTEANTSKEALFSLKWQPNTDNAFMTYGKSHIGFWKINNENGTTALTRRNGVFDKIAKPKYVICATYSPNGSVIAGDSNGNIVWFNEGTSKVSKAEQNIHKGGVFSLTYVESKDEYISGGKDNIFIAWNNQLERVREIGSLSDQYGPPRCCVYDVTSEQFLIGTSKNCIIQ--VKADWSEEKALVQGHSDEMWGLAAHASKPIFVTCSHENLVCVWNGEKQELIWSYFIEDGAQCAELHPSEPFVLVGTKNGTLYVLNYETKEELVTVPV-SRDCIDDVKVSPNSKYLAAACRDSNIYLYNWPKEVTSFKKPKVLQGHSSRVLHLDWCTDGEFMQSNSGDYEVLFWHAESGCQVLTPAALRDTEWSTYTCPFGFPVMGIWPEGADGTDINTCCRSNNKKLVATGDDFGAVNLFKYPSVKLKSEASIGVGHSSHVTCVRFLHDDSSLITVGGLDSSIMQWKMV 765
            P  P GS P  S + V+K T   +   K+N  R S+S+  SP     +N  S G                   + PK    S+             +  VK ++RGR + +Y P +  ++       + P ++LKL+WVYGYRG+DCR+NL+++P TGE VY +A VVVLY+ +   QRHY  HNDDVKC+A+HP    IA+GQVAG   D K   PHVR+WD+ TL T  V+G G F+R +  + FS + G   +C +D+SNDHV  ++DW+K +KL +   S EA+F+  + P   N  +T GKSH+ FW +      ++L ++ G+F+K  KPK+V+C T+S NG  I GDS+GNI+ + +GT+++S A Q  H+GG+F+L  +        GGKD   I+W+   +++R+   + +Q+GP R  V +   +  LIGT++N ++Q  +  D++    + QGH+DE+WGLA HASK  F+TC H+    +W+      +W   IED AQ +  HPS   V VGT  G  +V + ETK+ LVTV     + +  ++ SP+  +LA    D+ IY+Y        + +     GHSS + HLDW  + +F+ SNSGDYE+L+W   +  QV++    RD EW+TYTC  GF V G+WPEG+DGTDIN  CR++ KKL++TGDDFG V+LF YP  + ++ + I  GHSSHVT V FL +DS LI+ GG D+SIMQW+++
Sbjct:  104 PKKPTGSLP--SPSGVRKETAVPA--TKSNIKRTSSSERVSPGGRRESNGDSRGNRNRTGSTSSSSSGKKNSESKPKEPVFSAE------------EGYVKMFLRGRPVTMYMPKDQVDSYSLEAKVELPTKRLKLEWVYGYRGRDCRNNLYLLP-TGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNGGTNLCAVDDSNDHVLSVWDWQKEEKLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLEG----SSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKDRKLISWSGNYQKLRKT-EIPEQFGPIRT-VAEGKGDVILIGTTRNFVLQGTLSGDFT---PITQGHTDELWGLAIHASKSQFLTCGHDKHATLWDAVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKD-LVTVHTDGNEQLSVMRYSPDGNFLAIGSHDNCIYIYGVSDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNSGDYEILYWVPSACKQVVSVETTRDIEWATYTCTLGFHVFGVWPEGSDGTDINAVCRAHEKKLLSTGDDFGKVHLFSYPCSQFRAPSHIYGGHSSHVTNVDFLCEDSHLISTGGKDTSIMQWRVI 815
The following BLAST results are available for this feature:
BLAST of Echinoderm microtubule-associated protein family vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMAL10.000e+040.60Echinoderm microtubule-associated protein-like 1 O... [more]
back to top