TCONS_00017499-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017499-protein
Unique Name	TCONS_00017499-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	566

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017499-protein ID=TCONS_00017499-protein|Name=TCONS_00017499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
MSTIMIPXSGLPGEKSICEGFQGASEPESFITQFQQENCILLTSLAPALH
LLDLQDVKRVTFHQTVVNDLFEKLKKRIGELNNNDEEKLSELLDHIFHFI
HVDVLRPIVMDTMKKTKNIKPEYIEQIASHEKIYKDCPIEVKRRVWMNNH
PMFGDAVGPILNKYIEEKNKILFDIETVKIKSFYNIPPRQRRQKAVIKEL
VDMIGGSIELYNLVLQFLRTLYLRTKEEHYCSLRGELLMAFHDADIKEIR
QVDPCHKFAWLLDACIRDKSIDTKRLKELQSFLDSMKKTQEEILGDIGMI
LCDPYATYTIVQSIIQHIDRLMKAEQLPRSSNDLAFLVRLLLLSVHSWNM
LKNQDFKEDPINIDIITKFLPMIISLMLDNTSSIQTITSDAIKLPDSLWK
MVETNQACQCIFSFFVNQLIMHNKKYILSGVLPGFATALKNQPISATVGN
LFVHSLLRHQEAFTDTSHCKLIFDQFLMTWVQYEEVLHHILRLLWCAYEK
IDSQLLVAILTAAQPALQHSDAVHDVHARLVDMIASWKVNTPSGSSNTSS
PALSISPVVSPGLTVP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009793	XLOC_009793	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017499	TCONS_00017499	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010405	COBRA1
IPR011989	ARM-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0045892	negative regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010405	Cofactor of BRCA1	PFAM	PF06209	COBRA1	coord: 104..559 e-value: 1.5E-144 score: 482.3
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 259..548 e-value: 1.0E-4 score: 20.8

Blast

[Close]

BLAST of TCONS_00017499-protein vs. Swiss-Prot (Human)
Match: NELFB (Negative elongation factor B OS=Homo sapiens GN=NELFB PE=1 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 5.862e-125
Identity = 207/566 (36.57%), Postives = 330/566 (58.30%), Query Frame = 0

Query:   10 GLPGEKSICEGFQGASEPESFITQFQQENCILLTSLAPALHLLDLQDVKRVTFHQTVVNDLFEKLKKRIGELNNNDE-----EKLSELLDHIFHFIHVDVLRPIVMDTMKKTKNIKPEYIEQIASHEKIYKDCPIEVKRRVWMNNHPMFGDAVGPILNKYIEEKNKILFDIETVKIKSFYNIPPRQRRQKAVIKELVDMIGGSIELYNLVLQFLRTLYLRTKEEHYCSLRGELLMAFHDADIKEIRQVDPCHKFAWLLDACIRDKSIDTKRLKELQSFLDSMKKTQEEILGDIGMILCDPYATYTIVQSIIQHIDRLMKAEQLPRSSNDLAFLVRLLLLSVHSWNMLKNQDFKEDPINIDIITKFLPMIISLMLDN---------TSSIQTITSDAIKLPDSLWKMV-ETNQACQCIFSFFVNQLIMHNKKYILSGVLPGFATALKNQPISATVGNLFVHSLLRH----QEAFTDTSHCKLIFDQFLMTWVQYEEVLH-HILRLLWCAYEKIDSQLLVAILTAAQPALQHSDAVHDVHARLVDMIASWKVNTPSGSSNTSSPALSI 555
            G+   + + E     +EP   I QFQ EN +LL SL  AL  LDL    R+ FHQ+V ++L +KL +R+  + +  +     +KL +LL+  F  + +  L+P+VM  MK    +  + ++ + + +++Y+ C +EVKR++W +N  +FGD V P+L +YI EK   LF  E   + +F++  P+ RRQ  V++ L  M+G +++LY++VLQFLRTL+LRT+  HYC+LR ELLM+ HD D+ EI  VDPCHKF W LDACIR++ +D+KR +ELQ FLD +KK QE++LGD+ MILCDP+A  T+  S ++H+  L+  E LPR S DL  L+RLL L   +W+M+ +Q FKE  + +++IT+FLPM++S ++D+          +  +   S    LP+S  K + E   AC+    + ++     NK  +L  +LPG      +       G++F+H L  +     + F     C  +FD F +T    +E +H H LRLL   + ++    L A+  A +P  Q  +AV +++++L + +       PS +    +PAL +
Sbjct:    9 GVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQETLPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVDQKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLR-LLPGLVETFGD----LAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHALRLLIHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAAETPALEL 569

The following BLAST results are available for this feature:

BLAST of TCONS_00017499-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017499-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NELFB	5.862e-125	36.57	Negative elongation factor B OS=Homo sapiens GN=NE...	[more]

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TCONS_00017499-protein (polypeptide) - C. hemisphaerica