TCONS_00017442-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017442-protein
Unique Name	TCONS_00017442-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1074

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017442-protein ID=TCONS_00017442-protein|Name=TCONS_00017442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp
MSNDSVILNQIRKDWYNQGSNLINVHIYVKEVDDLDIVFDETSVTLSFYT
RQPKFLKEHGVNKKHNKRFIYVLNTRYEIDTKDSKFHVKEPYIELLLKKT
IEKKWESLECQPSLQTKKKHDDTPSPSKKQPSKGQKKGQQLLGGKSTPLS
KKGNESETKQEAETKVDTNLPGSSKASAVDKRNIQKTVSQSQVESNLGLT
GLENYANNCYMNVVIQLLANIQELRDYLKSDQYIKDINTNNPLCSGGKVV
KAFADVVKILWSYRRNAFKPSELKSIMGKRCTLFLGWQQHDAQEFCSSLL
DNLHEDLNQPRGGEPNEGSENEKPETAWNSHTKRNNSFIVKMFHGQLMSK
VTCDSCRKVSYSYDPCAQISLPIPSSKQTLQVVFFTRDITSPPMLTKLQV
STSNAKLWHLVXMLIKLQVSTSNAKLWHLVNMLQTTVKVPHHLIALFSGV
TDVCFNLQSSLTPFAKQKFIVAAELSAKDENDVISVPVFQHLSHARNVMR
CDNCLKTQDEIQGKLKRCTRCMVASYCSRDCQTKHWSFHSKVCTKELKSI
VGLSFFVTVKKDTTYERLEEVLRERAKFTTEAIQVNATEPAESNSEQNSE
NKGNESAENKIKPAQTSSNLKFLIKASSKMNVNNEESATELDPETFTTEQ
ISKSACLIMEWQNSVECDEKNGEEISTRKMPIHEEIGAECFGVTSPQDQC
SLYDSLKLFMEPERLDERESWKCPKCATPQSAKKEMAISSPPLLLLLHLK
RFTYGDHGQKIHRAVSYPLNGLDLTPYVAKETRNKMDHSLVYDLCGVITH
RGNMRMGHYTCMVRLINQLDQEEVGWRYFDDDSVMKIKSEKVVSQDAYVL
MYRVRGAHNAVRLDRFSSLSNVSGSQENSSSSSSSVTKRKHAIDSTSSKQ
DRKSASEYTLGVNMKRSLSVENPSDGRKGSDSDNNYSSPVSTRRCTSAIP
NDNSTRKKEYATQSSNLTSTSLPNVALAANNVTLETSKLASGSSEGSLEE
NFDTLTLNDNDENAKDDTVFESTATTKNDVIEPGTLKNDVIDKNDVTESI
VDKDDVILGACAVDVASLNENDLD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009762	XLOC_009762	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017442	TCONS_00017442	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR001394	Peptidase_C19_UCH
IPR002893	Znf_MYND
IPR007052	CS_dom
IPR018200	USP_CS
IPR028889	USP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 8..175 e-value: 5.7E-11 score: 42.2
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 6..116
None	No IPR available	GENE3D	3.90.70.10		coord: 186..784 e-value: 8.3E-76 score: 254.5 coord: 785..866 e-value: 8.4E-16 score: 56.9
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 699..853 coord: 198..379
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 497..545
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 200..852 e-value: 2.8E-67 score: 226.8
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 501..543 e-value: 5.2E-9 score: 36.0
IPR002893	Zinc finger, MYND-type	PROSITE	PS01360	ZF_MYND_1	coord: 501..543
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 501..543 score: 11.724
IPR007052	CS domain	PFAM	PF04969	CS	coord: 13..99 e-value: 1.6E-4 score: 22.5
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 8..109 score: 12.235
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 201..216
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 792..809
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 200..855 score: 46.698

Blast

[Close]

BLAST of TCONS_00017442-protein vs. Swiss-Prot (Human)
Match: UBP19 (Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19 PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 1.374e-79
Identity = 199/617 (32.25%), Postives = 295/617 (47.81%), Query Frame = 0

Query:    6 VILNQIRKDWYNQGSNLINVHIYVKEV--DDLDIVFDETSVTLSFYTRQPKFLKEHGVNKKHNKRFIYVLNTRYEIDTKDSKFHVKEPYIELLLKKTIEKKWESLECQPSLQTKKK---------HDDTPSPSKKQPSKGQKKGQQLLGGKSTPLSKKGN----ESETKQEAET-KVDTNLPGSSKASAVDKRNIQKTVSQSQVESNL---------GLTGLENYANNCYMNVVIQLLANIQELRDYLKSDQYIKDINTNNPLCSGGKVVKAFADVVKILWSYRRNAFKPSELKSIMGKRCTLFLGWQQHDAQEFCSSLLDNLHEDLNQPRG----------GEPNEGSENEKPETAWNSHTKRNNSFIVKMFHGQLMSKVTCDSCRKVSYSYDPCAQISLPIPSSKQTLQVVFFTRDITSPPMLTKLQVSTSNAKLWHLVXMLIK-LQVSTSNAKLWHLVNMLQTTVKVPHHLIALFSGV-TDVCFNLQSSLTPFAKQKFIVAAELSAKDENDVISVPVFQHLSHARNVMRCDNCLKTQDEIQGKLKRCTRCMVASYCSRDCQTKHWSFHSKVCTKELKSIVGLSFFVTVKKD-TTYERLEEVLRERAKFTTEAIQ 584
            V L  ++ D Y +G + + VH+YVKE+  D   ++F E   TL F TR   FL+ H     H   F + +  R  I+ +   F      I++ L+K   ++W  LE   +     K          D TP      P  GQ++ + +   KS   S+        + T  E  T K +T+L  S K + +        VS   VE            G TGL N  N C+MN VIQ L+N +ELRD+     +  +IN NNPL +GG++   FA +++ LW    +AF+PS+LK+I+  + + F G+ QHDAQEF + LLD LHEDLN+ +           G P+E    E    AW  H  RN+SFIV +F GQ  SK+ C  C KVS ++DP   + +P+P  ++ L V +F R+  S P+   + VS  N+    ++  L + + V   N +L  ++      V +P H +   S   T +CF L SS    AK++ +V   L  +    V SVP          + +C  C + Q     KLKRCTRC    YC++ CQ  HW  H  +C  E    +G  F V+V     TY RL ++L   A+++    Q
Sbjct:  280 VNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTT-FRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVGGAKVAVPTGPTPLDSTPPGGAPHPLTGQEEARAVEKDKSKARSEDTGLDSVATRTPMEHVTPKPETHL-ASPKPTCMVPPMPHSPVSGDSVEEEEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEE----AWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPVPLPQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVKPENLRLAEVIKNRFHRVFLPSHSLDTVSPSDTLLCFELLSSE--LAKERVVV---LEVQQRPQVPSVP----------ISKCAACQRKQQSEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLCRPE---NIGYPFLVSVPASRLTYARLAQLLEGYARYSVSVFQ 872

HSP 2 Score: 109.768 bits (273), Expect = 4.131e-24
Identity = 61/162 (37.65%), Postives = 87/162 (53.70%), Query Frame = 0

Query:  698 DQCSLYDSLKLFMEPERLDERESWKCPKCATPQSAKKEMAISSPPLLLLLHLKRFTYGDH--GQKIHRAVSYPLNGLDLTPYVAKETRNKMDHSLVYDLCGVITHRGNMRMGHYTCMVRLINQLDQE--EVGWRYFDDDSVMKIKSEKVVSQDAYVLMYRVR 855
            DQC     L LF  PE L   E+W CP+C   + A K++ +   P +L++ LKRF++       KI+  V +P+  LDL+ +   +   ++     YDL  VI H G M  GHYT   RL N    +  +VGWR FDD +V  +   +VV++ AYVL YR R
Sbjct: 1061 DQC-----LNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPS---YDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRR 1214

The following BLAST results are available for this feature:

BLAST of TCONS_00017442-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBP19	1.374e-79	32.25	Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo s...	[more]

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TCONS_00017442-protein (polypeptide) - C. hemisphaerica