TCONS_00017423-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017423-protein
Unique Name	TCONS_00017423-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017423-protein ID=TCONS_00017423-protein|Name=TCONS_00017423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MVMAQYTNTQYVAHEFVRQYYTILHKDPTQLHRFYTKESRLTHGVSPNAK
SDEQPVCGQEAIYEKISQLNFKNCFTKIRSVDSHPTLAGGVVIQVNGELA
NSGMQYRKFMQTFVLAQQEPKKYHVVNDIFRYQDETFEDTENDETIDGTV
ESENGYQTYDGVQSNDLNDVPIDQEVPLITNNKPLIDEPTDDYAYSGYLQ
NDQEQEPKMNGDIASEEPEEVQNDESEAQYVEEEPELPVEEPADVEVPVE
PVPEPSITETAEPTQEEIKPIVNEPEEQVQPTEPEGPPKPVTWAALAKKN
TASSVVVAPVATPQPKPAPKKSSPAPQKAPPKKREEPQPKKEQSEEPRRR
NIAPDNHQIFIGNLPTSITEKDVRDHFGEFGNIIEIRLNAKNFGFIAFDG
PDAPSKILTKAKVKMESIVIHGNTINIEVKRSGGAGRERTNERGGGGGFR
RDRGSDKERRGGGDRGGDRSDFNKNKNNGQFNNNRSSGGGEK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009756	XLOC_009756	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017423	TCONS_00017423	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR002075	NTF2
IPR018222	Nuclear_transport_factor_2_euk
IPR032710	NTF2-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 358..428 e-value: 1.7E-9 score: 47.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 359..424 e-value: 4.4E-11 score: 42.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 357..432 score: 15.562
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 351..462
None	No IPR available	GENE3D	3.10.450.50		coord: 2..142 e-value: 1.0E-36 score: 125.4
None	No IPR available	GENE3D	3.30.70.330		coord: 315..450 e-value: 2.0E-19 score: 69.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..492
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..269
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 12..132 e-value: 1.3E-32 score: 112.7
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 12..132 score: 29.436
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 12..134 e-value: 4.3013E-40 score: 140.11
IPR032710	NTF2-like domain	SUPERFAMILY	54427	NTF2-like	coord: 8..133

Blast

[Close]

BLAST of TCONS_00017423-protein vs. Swiss-Prot (Human)
Match: G3BP1 (Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.540e-53
Identity = 143/460 (31.09%), Postives = 214/460 (46.52%), Query Frame = 0

Query:   11 YVAHEFVRQYYTILHKDPTQLHRFYTKESRLTHGVSPNAKSDEQPVCGQEAIYEKISQLNFKNCFTKIRSVDSHPTLAGGVVIQVNGELANSGMQYRKFMQTFVLAQQ--EPKKYHVVNDIFRYQDETFEDTENDETIDGTVESENGYQTYDGVQSNDLNDVPIDQEVPLITNNKPLIDEPTDDYAYSGYLQNDQEQEPKMNGDIASEEPEEVQNDESEAQYVEEEPELPVEE--PADVEVPVEPVPEPSITETAEPTQEEIKPIVNEPEEQVQPTEPEGPPKPVTWAALAKKNTASS-----------VVVAPVATPQPKPAPKKSSP--APQK----------APPKKREEPQPKKEQSE----EPRRRNIAPDNHQIFIGNLPTSITEKDVRDHFGEFGNIIEIRLNAK----NFGFIAFDGPDAPSKILTKAKVKMESIVIHGNTINIEVKRSGGA 435
             V  EFVRQYYT+L++ P  LHRFY K S   HG   +       V GQ+ I+ K+   NF NC TKIR VD+H TL  GVV+QV G L+N+    R+FMQTFVLA +     K++V NDIFRYQDE F          G V         +  +  +    P             ++ + +  +     + ND E+  +        +PE     E  ++  EE+PE  +EE  P D +    P P     + A+  QE+++                      +WA++  KN   S           VV  P + P+P+  P+   P   PQ+           PP++   P+P +E  E    EPRR    PD+HQ+FIGNLP  + + +++D F  +GN++E+R+N+     NFGF+ FD  +   K+L+   +     V     +N+E K++  A
Sbjct:   10 LVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF---------GGFVTEPQEESEEEVEEPEERQQTP------------EVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAP----ADIAQTVQEDLRTF--------------------SWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQR--GPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEV----RLNVEEKKTRAA 418

The following BLAST results are available for this feature:

BLAST of TCONS_00017423-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017423-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G3BP1	2.540e-53	31.09	Ras GTPase-activating protein-binding protein 1 OS...	[more]

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TCONS_00017423-protein (polypeptide) - C. hemisphaerica