TCONS_00017420-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017420-protein
Unique NameTCONS_00017420-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017420-protein ID=TCONS_00017420-protein|Name=TCONS_00017420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
MHSNDHEFSKPASPSVPYMNDSELQIQTRFDGTPNKTIYVTSLNHARTPF
DLPEESCDSFIDIEEASVSLPGKPMKDGSETYHHSFMAALSYDQDLRNQK
RDQYEPYHRMQKSTNVSPHQELNELMKTVDTKKSIFEFEAPLSPKEPSID
LLTLDPPRIEIIEEPETTYRARYESEGCKGPIHGASETGFPSVKIVGYVG
PVKLQVFVVTSDLEPHLHAATGPGSSKTTCEEICLDDQYKTPAIEMTITP
TDNKDEMVAVFDQLSIRRIRNFEADRELRKRGIEPASWKSKKKEAKLAFR
AKIPCTNLHPNYVITSFSRSFLCTAPSGNPEIWWISKTESYAEGGDELGF
IGKKFASGFKVRFFSREDDGNSWEVYADIDKTKSNLNACVVRIPPYKDTL
LKENAVIHVEIRVGSDKEPRCSEPFLFTYITKAAERCQNCTQIKSYLKKI
CNGETADLSSSPENLDIKTEVQSPVRKIVSTPKPSPQRQPVQSPAVVKSA
HPHNPNSLLNIAPNLKTLLRTQTIPNSPVANLMTMPSSGSSLKSVAVIAP
SSSVPLCLPSTKVVQGLPKPALPNANVSILPTLFQNSQPQISTQIYNAMQ
PTLQTTVPIAAPTPANNLMVSYQTVNQPVQVHQIKSSLPSNSPINQIFTT
QQFTDKSNSTSCFHAESSLNKARTSLHSELSDTPAPTTNLNTISKYV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009755XLOC_009755Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017420TCONS_00017420Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002909IPT
IPR032397RHD_dimer
IPR011539RHD_DNA_bind_dom
IPR013783Ig-like_fold
IPR014756Ig_E-set
IPR008967p53-like_TF_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002909IPT domainSMARTSM00429iptmega2coord: 329..430
e-value: 1.2E-4
score: 31.5
IPR032397Rel homology dimerisation domainPFAMPF16179RHD_dimercoord: 331..431
e-value: 2.4E-18
score: 66.0
IPR011539Rel homology domain (RHD), DNA-binding domainGENE3D2.60.40.340coord: 149..323
e-value: 2.1E-24
score: 85.8
IPR011539Rel homology domain (RHD), DNA-binding domainPFAMPF00554RHD_DNA_bindcoord: 159..294
e-value: 3.9E-16
score: 59.4
IPR011539Rel homology domain (RHD), DNA-binding domainPROSITEPS50254REL_2coord: 154..300
score: 11.633
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 329..432
e-value: 7.6E-19
score: 67.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..500
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 328..432
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 154..307

Blast
[Close]
BLAST of TCONS_00017420-protein vs. Swiss-Prot (Human)
Match: NFAT5 (Nuclear factor of activated T-cells 5 OS=Homo sapiens GN=NFAT5 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.655e-33
Identity = 94/277 (33.94%), Postives = 141/277 (50.90%), Query Frame = 0 
Query:  158 RIEIIEEPETTYRARYESEGCKGPIHGASETGFPSVKIVGYVGPVKLQVFVV--TSDLEPH--LHAATGPGSSKTTCEEICLDDQYKTPAIEMTITPTDNKDEMVAVFDQLSIRRIRNFEADRELRKRGIEPASWKSKKKEAKLAFRAKIPCTNLHPNYVITSFSRSFLCTAPSGNPEIWWISKTESYAEGGDELGFIGKKFASGFKVRFFSREDDGNSWEVYADIDKTKSNLNACVVRIPPYKD--TLLKENAVIHVEIRVGSDKEPRCSEPFLFT 428
             ++I+ +PET +RARY +EG +G +   ++ GFP+VK+ G+  PV LQVFV   +  ++PH    A    G + T C+E+ ++    T  IE+ + P++N   M    D + I ++RN  AD E R   I  A  K K   A+L FR  I   +      + + S   LCT P+G PEI   S      +G +E+  IGK F  G KV F     D NSW+  A+ID    + N  +V++PPY D    L  +  I+V    G   +    +PF +T
Sbjct:  281 ELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEG---TTVIEVGLDPSNN---MTLAVDCVGILKLRN--ADVEAR---IGIAGSKKKSTRARLVFRVNIMRKD-GSTLTLQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHITLPVSVGIYVVTNAGRSHD---VQPFTYT 542
The following BLAST results are available for this feature:
BLAST of TCONS_00017420-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFAT52.655e-3333.94Nuclear factor of activated T-cells 5 OS=Homo sapi... [more]
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