TCONS_00017362-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017362-protein
Unique NameTCONS_00017362-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017362-protein ID=TCONS_00017362-protein|Name=TCONS_00017362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1164bp
MMESSNNIIVLSRRIQEAIEVSMNPMSSKLERQEATKVNLEFMQNSPLCG
DVGLYFFKNKELNTTVRMCGLQILGQFIRSKWNELDDHVKTSIKKEVVDM
VYTCDQNEPSFIKEGLVKVFVEVVKRTWPQEWETLLSDLSGLQSIGDAQL
EIVMKIFHTMSDDIHNMDDKIKAQRRKDMLITLNTHMDGLFTFFFGTLRY
SATKLATEPTKANIIITKATLETITSFCTWVSFEHILSKDNLLLQTLLLL
LENNELKLLAAECMSTIFERKVQYEERLKMMILLSDDALKILVKSARSAN
GLSKNDGEEYTFLKKINNALTEFGVNQISNLWGDDKGFKDEPAGFSSYVQ
LLLEFTQHDSLYIVTNTLRTWNSFYANEAMKKNKVLRKAMDQLLDILTSK
IMKDTDPFSANSSEASLYNLYDFSDEDEYKGYFHSSRSAFSNLLEHLIEI
SPGKVLYNALVQLNNCLAVEPPDVSNMSMQQIMETKYYTALETLSFYCKH
SVQPVLEHHIERITPEMLAGCNTILKKVLDYKCEVVDFRLHLLKTIDTLF
CIFKVNKEHLLETVQMLFTLITEVVDPNSGKKKIQLQRQACFAFTSICKT
IPETLCEIYEELEPYIFARLEEKHLTNHEKGVLLEGLLRISTKNPDKEIQ
KSFMIKVTSFLKDSLTRELIQNALKSPDGLSFLLGIHEGEHTEQTDQELS
RLLLTIHSWSAITKACVHMPIDQIPEQPPDQDIEASTTTSPWIQPMIQIL
PQIFCLAEQYCMVWKMKDKYSLTIQAVLESHYTDVKLQYPENTVKPNRNF
GRGLASLQTIYAVLYAGIVNIASCHGPLLYSLPGLCDVIIQKMVTPWTCL
PTNKLGKIWRSFISSFVKGCPLRFYDVNVAPLLGHALPLTFEKLNADWQE
MKDILANKPQLVKSEKQETETEEIKKINLLDRFTEHFISAVCSMLLYRRS
YEAGSSQITSEGIEFGNLGKYIITQEGLSTMMMQVMFTALTWNSSGIVSR
ISNYILPIINTEFNGNSRLGSNIVDQLFILIIQAIEIHGRDQHVFTSLTT
IAFHFYVKARLQFPSLVRIMIMIPGCADDKLKEFDLNYFGCDQVENVTEK
RRKKVKAQFKNLIEGARGEDLSMLYRENIVIKDLPRLPKREKESRSLLNS
KNEDIVGLTQLFGT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009720XLOC_009720Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017362TCONS_00017362Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013598Exportin-1/Importin-b-like
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 40..102
e-value: 4.3E-6
score: 26.5
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 36..103
score: 9.419
IPR013598Exportin-1/Importin-beta-likePFAMPF08389Xpo1coord: 109..264
e-value: 4.5E-22
score: 78.6
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 13..1055
e-value: 5.4E-42
score: 143.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 341..722
coord: 15..274

Blast
[Close]
BLAST of TCONS_00017362-protein vs. Swiss-Prot (Human)
Match: XPO5 (Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.887e-57
Identity = 183/680 (26.91%), Postives = 331/680 (48.68%), Query Frame = 0 
Query:    6 NNIIVLSRRIQEAIEVSMNPMSSKLERQEATKVNLEFMQNSPLCGDVGLYFFKNKELNTTVRMCGLQILGQFIRSKWNELDDHVKTSIKKEVVDMVYTCDQN---EPSFIKEGLVKVFVEVVKRTWPQEWETLLSDLSGLQSIGDAQLEIVMKIFHTMSDDIHNMDDKIKAQRRKDMLITLNTHMDGLFTFFFGTL-----RYSATKLATE---PTKANIIITKATLETITSFCTWVSFEHILSKDNLLLQTLLLLLENNELKLLAAECMSTIFERKVQYEERLKMMILLSDDALKILVKSARSANGLSKNDGEEYTFLKKINNALTEFGVNQISNLWGDDKGFKDEPAGFSSYVQLLLEFTQHDSLYIVTNTLRTWNSFYANEAMKKNKVLRKAMDQLLDILTSKIMKDTDPFSANSSEASLYNLYDFSDEDEYKGYFHSSRSAFSNLLEHLIEISP-------GKVLYNALV------QLNNCLAVEPPDVSNMSMQQIMETKYYTALETLSFYCKHSVQPVLEHHIERITPEMLAGCNTI--LKKVLDYKCEVVDFRLHLLKTIDTLFCIFKVNKEHLLETVQMLFTLIT-EVVDPNSGKKK---IQLQRQACFAFTSICKTIPETLCEIYEELEPYIFARLE-EKHLTNHEKGVLLEGLLRISTKNPDKEIQKSFM 654
            + +  L  ++ +A+ V M+P S++  R EA K   EF +  P+C   GL   +  ++   VR  GLQIL   ++ +WN +    K  +K  V++++     N   E + IK+ L ++ VE++KR WPQ W  +L +L  L   G+ Q E+VM I   +++D+      +  QRR+D+  TL  +M+ +F+F   TL     +Y   K  T      +AN  +  A L T+  +  WVS  HI +++  LL+ L LLL   EL+L AAEC+     RK + E+R  +M+L  D A+  ++ +A++A+G    + + Y FLK++   L   G NQ+  L G D    + P+ F  Y++  L FT H S ++ ++T  TW + + +E + ++ +L   + + L    + ++K   P S   S +  Y+ +DF  ++++  +F+SSR+    ++     + P       G+ L   L        +N+C AV   + S  S    + +  +   E ++ +    ++ V+      +  E +   + I  L+ VL++  +       +L  +  LF       E L +    LF+ +T E V+ +   +      ++R AC +   +C+  P+ +   ++ L  ++   L  E  LT  EK  L+E L+ IS +  + E QK F+
Sbjct:    4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQV-AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQ-TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE-KHYVFLKRLCQVLCALG-NQLCALLGADSDV-ETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFP-SKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCS----VFSPSFVQWEAMTLF----LESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFL 669

HSP 2 Score: 112.079 bits (279), Expect = 8.562e-25
Identity = 91/402 (22.64%), Postives = 173/402 (43.03%), Query Frame = 0 
Query:  762 MVWKMKDKYSLTIQAVLESHYTDVKLQYPENTVKPNRNFGRGLASLQTIYAVLYAGIVNIASCHGPLL----YSLPGLCDVIIQKMVTPWTCLPTNKLGKIWRSFISSFVKGCPLRFYDVNVAPLLGHALPLTFEKLNADWQ--EMKDILANKPQLVKSEKQETETEEIKKINLLDRFTEHFISAVCSMLLYRRSYEAGSS-------------QITSEGI-EFGNLGKYIITQEGLSTMMMQVMFTALTWNSSGIVSRISNYIL-PIINTEFNGNSRLGSNIVDQLFILIIQAIEIHGRDQHVFTSLTTIAFHFYVKARLQFPSLVRIMIMIPGCADDKLKEFDLNYFGCDQVENVTEKRRKKVKAQFKNLIEGARGEDLSMLYRENIVIKDLPRLPKREK 1142
            M+ KM + ++  +  +       + L  P   +  +  F   L  +Q  ++ LY    +I    GP +    Y++  L   ++         +P  +L  + R F+   V  CP   Y+  V+P+LG        +L+  WQ    + +L  + +      +  E  E + + +L R     I+  C   + ++  +  S+             ++T   + E  +LGK ++  E + T ++   F +L W  +    R ++ +  P++    +G   L ++ V  LF  +++ +++HG+      SL  +AF  Y   R ++  +  +M  IP    D L +FD        ++ V +KRRK    QFK LI G  G+ L   +R+ + IK+LP L K+ K
Sbjct:  791 MLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCC---VSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGT--LLADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLN-PSLQKVADKRRKD---QFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFKKTK 1183
The following BLAST results are available for this feature:
BLAST of TCONS_00017362-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO53.887e-5726.91Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1[more]
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