TCONS_00017316-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017316-protein
Unique Name	TCONS_00017316-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	388

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017316-protein ID=TCONS_00017316-protein|Name=TCONS_00017316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MGKAFWQNKHKLFFMATLMLAVGYVLLSKSSKQASSNKLLTKDETPSFVK
MSSCKQNNNVSIFYIKIQKTGSSTIKSMLLNYGLKKKMKICMDNTDLHHM
NFPYQIDESKLVKKPNEKCQLVADELIFHEKQAPNMMFGRPLIITSLRDP
IMHFVSMYKFTLVHYAVEMLTLLKLDFWDGVRVFLKNPDLVRAVYNTFDR
DEIHDFTLQQLVRPNLQAFSLGLNADSTEKEIQSKITSIDLVILSERFYE
SILLLAKRLCVPFEDLVFVRQNINHQDSTSRWKEVPPDVEKLIRKFNVVD
IMLYEKAKEKFENSIHAYPRDALNHDVEMYKNSIKRYAHKCESIKKPLAL
IDGNYCLPEEASYFYKLVRAKLRKELLRDLQEEYNKEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009691	XLOC_009691	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017316	TCONS_00017316	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009729	Gal-3-0_sulfotransfrase
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0009247	glycolipid biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005794	Golgi apparatus
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0001733	galactosylceramide sulfotransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009247	glycolipid biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0001733	galactosylceramide sulfotransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 367..387
None	No IPR available	GENE3D	3.40.50.300		coord: 28..347 e-value: 9.7E-5 score: 21.2
IPR009729	Galactose-3-O-sulfotransferase	PFAM	PF06990	Gal-3-0_sulfotr	coord: 3..341 e-value: 9.5E-26 score: 90.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 61..213

Blast

[Close]

BLAST of TCONS_00017316-protein vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.113e-16
Identity = 84/365 (23.01%), Postives = 156/365 (42.74%), Query Frame = 0

Query:   14 FMATLMLAVGYVLLSKSSKQASSNKLLTKDETPSFVKMSSCKQNNNVS--------IFYIKIQKTGSSTIKSMLLNYGLKKKMKICMDNTDLHHMNFPYQIDESKLVK--KPNEKCQLVADELIFHEKQAPNMMFGRPLIITSLRDPIMHFVSMYKFTLVHYAVEMLTL-LKLDFWDGVRVFLKNPDLVRAVYNTFDRDEIHDFTLQQLVRPNLQAFSLGLN--ADSTEKEIQSKITSID----LVILSERFYESILLLAKRLCVPFEDLVFVRQNINHQDSTSRWKEVPPDVEKLIRKFNVVDIMLYEKAKEKFENSIHAYPRDALNHDVEMYKNSIKRYAHKCESIKKPLALIDGNYCLPEEA 361
            F + L+L   Y +    +  AS+        +P  ++  +  + N  +        I ++K  KT SST+ ++L  +G K ++K    N   +  ++P     S LV+  +P     ++ + + FH  +   ++    + IT LRDP   F S +     HY   ++ L  KL   D +  FL++PD        +D +  +   L+     NL  F LG +   D +  ++Q  I  ++    LV+L E F ES++LL   LC   ED+++ + N        R   +  ++      +N++D  LY      F   + A+ R+ +  +V   +++ +R    C         IDG + +   A
Sbjct:   22 FTSFLLLVYSYAVPPLHAGLASTTPEAAASCSPPALEPEAVIRANGSAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGR-NDFDYPTFFARS-LVQDYRPGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSF-----HYFGPVVPLTWKLSAGDKLTEFLQDPD------RYYDPNGFNAHYLR-----NLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPR---LSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTIC---------IDGGHAVDAAA 356

The following BLAST results are available for this feature:

BLAST of TCONS_00017316-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G3ST1	1.113e-16	23.01	Galactosylceramide sulfotransferase OS=Homo sapien...	[more]

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TCONS_00017316-protein (polypeptide) - C. hemisphaerica