TCONS_00017259-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017259-protein
Unique NameTCONS_00017259-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017259-protein ID=TCONS_00017259-protein|Name=TCONS_00017259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=633bp
MFYANFVLAKKGPLARVWLAAHWEKKLSKTHVFETDLQSSIESIISPKVK
IALRTSGHLLLGVVRIYSRKAKYLLADCTEALIKIKMAFRPDVVDLPIDN
QKAAASAITLPEFQEWDAMVNNMGKFDITVTLQNNQCRVEEITMKEDLFS
SRYLSNDNFFGDVPFGETSDGEIMRDEVTMDHTLNNLTADVSKTHLEEDE
TGLKDKSSLSLNQSNLELALNDPMMEDVGFGAGEGLDFLEDFGEVNGLDE
DLDKVAPIEDLDETLKDKEKEKEREDQEAADRSVAEAVAELTGEKETVVD
PEPVLDEDDVDNEAIVPDQPTETATTGMETTLFYTEAVALEPVEVTVGKE
KRKKRKRKLVVDNEKIIQRDQMKKQIESYDDLVKAAVVAPPTRWRMSALD
VTAKMLFDRPISFKSKKARLEELYKAHQTTKIPEDLIIPSSQEDEEVQLE
DPTEILREADENATNLPELTVENTDIQETILPEEQEEERFEPPIDDIPPP
MDIDMENPDQENDITVPPPFQLDVTEKTINETVNESSAKETEDEEPEAEK
TDQQDKRWTKRTQQTLNLLEKTLKKKSAPVNFKDLTKKYNRKQATHRFYT
LLTLSKEKCITVEQDGLFADILIHPGERFNSYS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009656XLOC_009656Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017259TCONS_00017259Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006910Rad21_Rec8_N
IPR006909Rad21/Rec8_C_eu
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0000228nuclear chromosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000228 nuclear chromosome
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 258..278
NoneNo IPR availableGENE3D1.10.10.580coord: 557..626
e-value: 1.3E-14
score: 53.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 533..561
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..282
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 1..103
e-value: 7.7E-39
score: 132.2
IPR006909Rad21/Rec8-like protein, C-terminal, eukaryoticPFAMPF04824Rad21_Rec8coord: 582..629
e-value: 1.2E-10
score: 40.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 560..629

Blast
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BLAST of TCONS_00017259-protein vs. Swiss-Prot (Human)
Match: RAD21 (Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 1.422e-78
Identity = 180/441 (40.82%), Postives = 249/441 (56.46%), Query Frame = 0 
Query:    1 MFYANFVLAKKGPLARVWLAAHWEKKLSKTHVFETDLQSSIESIISPKVKIALRTSGHLLLGVVRIYSRKAKYLLADCTEALIKIKMAFRPDVVDLPIDNQKAAASAITLP-EFQEWDAMVNNMGKFDITVTLQNNQCRVEEITMKEDLFSSRYLSNDNFFGDVPFGETSDGEIMRDEVTMDHTLNNLTADVSKTHLEEDETGLKDKSSLSLNQSNLELALNDPMMEDVGFGAGEGLDFLEDFGEVNGLDEDLDKVAPIEDLDETLKDKEKEKEREDQEAADRSVAEAVAELTGEKETVVDPEPVLDEDDVDNEAIVPDQPTETATTGMETTLFYTEAVALEPVEVTVGKEKRKKRKRKLVVDNEKIIQRDQMKKQIESYDDLVKAAVVAPPTR----WRMSALDVTAKMLFDRPISFKSKKARLEELYKAHQTTKIPEDL 436
            MFYA+FVL+K+GPLA++WLAAHW+KKL+K HVFE +L+SS+ESIISPKVK+ALRTSGHLLLGVVRIY RKAKYLLADC EA IKIKMAFRP VVDLP +N++AA +AITLP EF ++D  + ++   D+      NQ RVEEITM+E++ +   L  +N FGD  FG   D EIMR+    +     ++   S   LE ++      S+ +LN+    L   D   +D  FG G     L+D    N      D    + +    L     E+   D    D +V+    + + +    V+P P +     D   +VP++                EA ALEP+++TV KE + KRKRKL+VD+ K +    ++ Q+  Y D+V    +APPT+    W+ +      + LF  P        RL +L+    T  +PEDL
Sbjct:    1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLLLGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISIL-QENDFGD--FG-MDDREIMREGSAFEDDDMLVSTTTSNLLLESEQ------STSNLNEKINHLEYEDQYKDD-NFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVML----PEQPAHDDMDEDDNVSMGGPD-SPDSVDPVEPMPTM----TDQTTLVPNE---------------EEAFALEPIDITV-KETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETG---GVEKLFSLPAQ-PLWNNRLLKLFTRCLTPLVPEDL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00017259-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD211.422e-7840.82Double-strand-break repair protein rad21 homolog O... [more]
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