TCONS_00017214-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017214-protein
Unique NameTCONS_00017214-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017214-protein ID=TCONS_00017214-protein|Name=TCONS_00017214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MKPSKAFYCLLQFILLQIVRCKDEFQHVTCGSSLKLFNNRQNIRLHSHDV
KYGSGSGQQSVTGSRSADDQNSYWIVRGRHGQKCDRGTVIKCGDKIRLQH
LATKRNLHSHFFQSPITHNQEVSAFGEGGDGDSGELDSRLAFNHIDSFM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009634XLOC_009634Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017214TCONS_00017214Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016093MIR_motif
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016093MIR motifSMARTSM00472mir_2coord: 25..79
e-value: 1.2E-9
score: 48.0
coord: 87..147
e-value: 1.3E-4
score: 31.3
IPR016093MIR motifPFAMPF02815MIRcoord: 45..127
e-value: 7.7E-12
score: 45.3
IPR016093MIR motifPROSITEPS50919MIRcoord: 87..145
score: 9.899
IPR016093MIR motifPROSITEPS50919MIRcoord: 25..79
score: 10.071
IPR016093MIR motifSUPERFAMILY82109MIR domaincoord: 26..137
NoneNo IPR availableGENE3D2.80.10.50coord: 22..138
e-value: 6.1E-28
score: 96.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..68

Blast
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BLAST of TCONS_00017214-protein vs. Swiss-Prot (Human)
Match: SDF2 (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 7.614e-49
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 0 
Query:   28 VTCGSSLKLFNNRQNIRLHSHDVKYGSGSGQQSVTGSRSADDQNSYWIVRGRHGQKCDRGTVIKCGDKIRLQHLATKRNLHSHFFQSPITHNQEVSAFGEGGDGD 132
            VTCGS +KL N R N+RLHSHDV+YGSGSGQQSVTG  S DD NSYW +RG+    C+RGT IKCG  IRL H+ T RNLHSH F SP++ NQEVSAFGE G+GD
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128
The following BLAST results are available for this feature:
BLAST of TCONS_00017214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDF27.614e-4968.57Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
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