TCONS_00017144-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017144-protein
Unique Name	TCONS_00017144-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	325

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017144-protein ID=TCONS_00017144-protein|Name=TCONS_00017144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSAYFKEYFRAAKVLCQENQNFTACQQLGNLCVMLMYNEDNSNRAATDAC
KEYLILVRASTDYVDGITDWPRNMPWLYYKDDGSTVVLEKENVPQAFTRG
EILKFNLVSYRVNGSFLDIRKDPSILQLCPQPMSMTEKAFTMTNQYSIKC
QMSIAKLLQQDTVFFDMFLRVDNDKSQYPVPVLVDNVQTRGTFVNRDTER
KNWKLNRRFFLIDKYSGLGIIDDSVPSFIQYASSIELNFQLIDNGKFYPP
LLKIHYDVHDVDPVTMETDLVNIEFKVTYTMDTSQLDENIKITVGVLSAL
GVVYALVKISSWRRREGIAVLDCTS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009594	XLOC_009594	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017144	TCONS_00017144	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019170	Meckelin

Vocabulary: **Biological Process**
Term	Definition
GO:0060271	cilium assembly
GO:0010826	negative regulation of centrosome duplication

Vocabulary: **Cellular Component**
Term	Definition
GO:0036038	MKS complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060271	cilium assembly
biological_process	GO:0010826	negative regulation of centrosome duplication
cellular_component	GO:0036038	MKS complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019170	Meckelin	PFAM	PF09773	Meckelin	coord: 2..324 e-value: 1.6E-78 score: 264.6

Blast

[Close]

BLAST of TCONS_00017144-protein vs. Swiss-Prot (Human)
Match: MKS3 (Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-51
Identity = 115/339 (33.92%), Postives = 176/339 (51.92%), Query Frame = 0

Query:    2 SAYFKEYFRAAKVLCQENQNFTACQQLGNLCVMLMYNEDNSNRAATDACK--EYLILVRASTDYVDGITDWPRNMPWLYYKDDGSTV--VLEKENVPQAFT-RGE----ILKFNLVSYRVNGSFLDIRK-DPSILQLCPQPMSMTEKAFTMTNQYSIKCQMSIAKLLQQ--DTVFFDMFLR-VDNDKSQY--PVPVLVDNVQTRGTFVNRDTERKNWKLNRRFFLIDKYSGLGIIDDSVPSFIQYASSIELNFQLIDN---GKFYPPLLKIHYDVHDVDPVTMETDLVNIEFKVTYTMDTSQLDENIKITVGVLSALGVVYALVKISSWRRREGIAVLD 322
            S +F +Y +++   C    N T+CQ LGN+CVM   N ++ + A  DAC   +++    A    V  I+ W +N+PWL+Y D       VL   ++P  F+ +GE     LKF   SY + G+FL  +  +  +LQLCP   +    A++    Y   C++ I+K+L      +F+D++L   D ++ QY   VPVL  N+Q    FVN+D+    W L RR FL+D  SG      + P  I+ A+ I L+  L+ N   G  YPPL+ I Y   D+D     +  V + F VTY MD  +      I +GVL  L V+ +L+K + W+RR G  ++D
Sbjct:  223 SEWFAKYLQSSAAACWVYANLTSCQALGNMCVM---NMNSYDFATFDACGLFQFIFENTAGLSTVHSISFWRQNLPWLFYGDQLGLAPQVLSSTSLPTNFSFKGENQNTKLKFVAASYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILIDFPTPIFYDVYLEYTDENQHQYILAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDLGTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIAYS--DIDIKDANSQSVKVSFSVTYEMDHGEAHVQTDIALGVLGGLAVLASLLKTAGWKRRIGSPMID 556

The following BLAST results are available for this feature:

BLAST of TCONS_00017144-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017144-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MKS3	1.492e-51	33.92	Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2	[more]

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TCONS_00017144-protein (polypeptide) - C. hemisphaerica