TCONS_00017123-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017123-protein
Unique NameTCONS_00017123-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017123-protein ID=TCONS_00017123-protein|Name=TCONS_00017123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MSFRAIYIVKPTTRFPENILFHRSFPVIERKCKKSLGDDYVPIPPNCPLL
IIEALQLNRTDKFVADLDSCSRKQITPVYKLLDGKLFPVVAFLKNGLIFC
CIPHTEEKVNKTLLESEKNEDRGDFLYSPGVALAFALIQNMLKFIGFGNN
YETLQNKLQALHKYASIGFPLGIPTELDIHTALGIASYSENIPLPKIKGP
SWRATTYKGKQSLNIEINEFIKAIQFDSKEYPDVCEIYGTVRCKADVEES
PEISLDIIAPLESTIHNQMLFHPSVQLADDVTPLINKGANTGRQYGSRKL
RFCPPNNEIDLCQYKVKLHEDDIPVKAFYQMKGDQNRLTIMIQIQIAEQM
KSSFEAFEVQIPFFNRGPIVEFKSLTSSNLVLLPDKCTLLWNVGHKFSSK
GGDKIMEANVTFSNEFVPPIRTDPLLVGANSYITMYWRVSDFTYSGLKFD
NKSVELFPNSKIKVNSVTMLKTVEYKIWNSRGQITSTAFGVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009576XLOC_009576Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017123TCONS_00017123Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028565MHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1170coord: 196..358
e-value: 6.6E-17
score: 61.0
IPR028565Mu homology domainPFAMPF00928Adap_comp_subcoord: 201..476
e-value: 3.2E-26
score: 92.2
IPR028565Mu homology domainPROSITEPS51072MHDcoord: 210..478
score: 14.709
IPR028565Mu homology domainSUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 200..466

Blast
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BLAST of TCONS_00017123-protein vs. Swiss-Prot (Human)
Match: AP5M1 (AP-5 complex subunit mu-1 OS=Homo sapiens GN=AP5M1 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.629e-70
Identity = 151/494 (30.57%), Postives = 251/494 (50.81%), Query Frame = 0 
Query:    1 MSFRAIYIV--KPTTRFPENILFHRSFPVIERKCKKSLGDDYVPIPPNCPLL---IIEALQLNRTDKFVADLDSCSRKQITPVYKLLDG--KLFPVVAFLKNGLIFCCIPHTEEKVNKTLLESEKNEDRGDFLYSPGVALAFALIQNMLKFIGFGN-NYETLQNKLQALHKYASIGFPLGIPTELDIHTALGIASYSENIPLPKIKGPSWRATTYKGKQSLNIEINEFIKAIQFDSKEYPDVCEIYGTVRCKADVEE-SPEISLDIIAPLESTIHNQMLFHPSVQLADD--VTPLINKGANTGRQYGSRKLRFCPPNNEIDLCQYKVKLHEDDIPVKAFYQMKGDQNRLTIMIQIQIAEQMKSSFEAFEVQIPFFNRGPIVEFKSLTS-SNLVLLPDKCTLLWNVGHKFSSKGGDKIMEANVTFSNEFVPPIRTDPLLVGANSYITMYWRVSDFTYSGLKFDNKSVELFPNSKIKVNSVTMLKTVEYKIWNSRG 482
            M+ RA++++  +P T     + F R +P +E++ +   G  YVP+P + P L   + E   L+    FV   DSCSR   T +Y LL G  +L+PVVAFLKN +I+ C+P  E+ ++           R   +   GV+  F  +  +  F+  G  N   L  KL  L        P G   + ++  +L   +++ ++  P+ K P+W+  TYKGK  ++I I E +K++Q+D +   D  ++ GTV CK D+E   P +++ +  P   +    +L HP V   D   +T       +     G  K  F PP    +LC Y  ++     P+  FYQMK ++ +L I I +++ E +K++FE  E  IPF+NRGPI   +  TS   L +  +K  L+W +G KF  K  +  +   VTF  +       DP+  G  +Y+ +++R+ D+T +G   D  SV++F + K K+++   L + +Y IWNS+ 
Sbjct:    1 MAQRAVWLISHEPGTPLCGTVRFSRRYPTVEKRARVFNGASYVPVPEDGPFLKALLFELRLLDDDKDFVESRDSCSRINKTSIYGLLIGGEELWPVVAFLKNDMIYACVPLVEQTLSP----------RPPLISVSGVSQGFEFLFGIQDFLYSGQKNDSELNTKLSQLPDLLLQACPFGTLLDANLQNSLDNTNFA-SVTQPQ-KQPAWKTGTYKGKPQVSISITEKVKSMQYDKQGIADTWQVVGTVTCKCDLEGIMPNVTISLSLPTNGSPLQDILVHPCVTSLDSAILTSSSIDAMDDSAFSGPYKFPFTPPLESFNLCFYTSQVPVP--PILGFYQMKEEEVQLRITINLKLHESVKNNFEFCEAHIPFYNRGPITHLEYKTSFGQLEVFREKSLLIWIIGQKF-PKSMEISLSGTVTFGAKSHEKQPFDPICTGETAYLKLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRKLISSDYYIWNSKA 479
The following BLAST results are available for this feature:
BLAST of TCONS_00017123-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP5M12.629e-7030.57AP-5 complex subunit mu-1 OS=Homo sapiens GN=AP5M1... [more]
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