TCONS_00017112-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017112-protein
Unique Name	TCONS_00017112-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	629

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017112-protein ID=TCONS_00017112-protein|Name=TCONS_00017112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp
MTGYVVHNEGYQPDDDSASAAYNRSFDPEGGQSNGSVAKETKDGGEEEVR
QGWGNKFEFVLAIVGYAVGLGNVWRFPYLAQKNGGGAFLIPYILSLAFMG
IPVFYMELAIGQRLRRGPLHVWNKLSPYLAGVGLSSVVVSFLVGCYYNMI
VAWCFYYLFISFQAEVPYAKCPCEEGFSSCNETYGMVEECALSSPTTYFW
YRGALDTTSGIDDSGVFNWKLALCLLLAWILIFGITCKGTESMGKAVYFT
AIFPYVVLIIFFVRAMMLEGASDGIKHMFTPDFEALTKAEVWLDASTQIF
YSLGLAFGGLISMASYNEINNNIVRDALLVSVVNCGTSIFGGVTIFGILG
YKATVNYKHCLTKQPLDNRTCDLKTFLDDVAQGPGLTFIAFTEAMSTMDV
TQLWSVMFFMMTLTLGIGTMLGTYEAVRTTVIDLKIIPLRKELVSLILCL
VSFLFGLLFCQGSGQYWLDMFNSFAANIGLLTISLFEVIIIMYIYGIKKF
EKDIEFMLGKKPNWYWKSMWLFVTPGLTVLIIFASFYSLAANGIKYIRWD
PVTATTFLDDYPNWAKGLCILLIAASVIFIPITALLVNFDLFKIPSDESD
DKKEMDNEMRGIPNSSSQQALANHMITQG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009569	XLOC_009569	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017112	TCONS_00017112	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 398..417 score: 45.98 coord: 477..497 score: 33.18 coord: 517..537 score: 28.34 coord: 328..348 score: 39.73 coord: 131..157 score: 43.9 coord: 58..79 score: 71.39 coord: 87..106 score: 54.92 coord: 246..263 score: 54.83
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 50..586 e-value: 3.2E-177 score: 590.3
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 74..88
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 49..593 score: 90.408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 599..620
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 50..586

Blast

[Close]

BLAST of TCONS_00017112-protein vs. Swiss-Prot (Human)
Match: S6A20 (Sodium- and chloride-dependent transporter XTRP3 OS=Homo sapiens GN=SLC6A20 PE=1 SV=1)

HSP 1 Score: 488.804 bits (1257), Expect = 9.135e-167
Identity = 261/581 (44.92%), Postives = 360/581 (61.96%), Query Frame = 0

Query:   47 EEVRQGWGNKFEFVLAIVGYAVGLGNVWRFPYLAQKNGGGAFLIPYILSLAFMGIPVFYMELAIGQRLRRGPLHVWNKLSPYLAGVGLSSVVVSFLVGCYYNMIVAWCFYYLFISFQAEVPYAKCPCEEGFSSCNETYGMVEECALSSPTTYFWYRGALDTTSGIDDSGVFNWKLALCLLLAWILIFGITCKGTESMGKAVYFTAIFPYVVLIIFFVRAMMLEGASDGIKHMFTPDFEALTKAEVWLDASTQIFYSLGLAFGGLISMASYNEINNNIVRDALLVSVVNCGTSIFGGVTIFGILGYKATVNYKHCLTKQPL--------------------------------------DNRTCDLKTFLDDVAQGPGLTFIAFTEAMSTMDVTQLWSVMFFMMTLTLGIGTMLGTYEAVRTTVIDLKIIP--LRKELVSLILCLVSFLFGLLFCQGSGQYWLDMFNSFAANIGLLTISLFEVIIIMYIYGIKKFEKDIEFMLGKKPNWYWKSMWLFVTPGLTV--LIIFASFYSLAANGIKYIRWDPVTATTFLDDYPNWAKGLCILLIAASVIFIPITAL 585
            E+ R  W N  +FV A + YAVGLGNVWRFPYL Q  GGG+FL+PYI+ L   G+P+ Y+ELA+GQR+R+G +  W  +SPYL+GVG++SVVVSF +  YYN+I AW F+YLF SFQ  +P++ CP        N T G  EEC  +S T YFWYR  L+ +  + ++G   W+ ALCLLLAW++++    +GTES GK VYFTA  PY VLII+ +R + L GA++G+ +MFTP  E L   + W++A+TQIF+SLGL FG LI+ ASYNE +NN  + A++VS++N  TSIF  +  F I G+KAT NY++CL K  L                                        + C L++ LD   QG GL FI +TEA+  M+V+QLWSV++F M L LGIG+MLG   A+ T + D KII   L KE +S ++CLV+   G++F   +G YW D+FN +AA + LL I L E I + Y+YG+++FE D++ M G+  +WYWK MW  V+P L V   + + S Y L    +KY  WD         DYP +A  +  LL+A+S + IP+ AL
Sbjct:    2 EKARPLWANSLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVCPLNG-----NHT-GYDEECEKASSTQYFWYRKTLNISPSLQENGGVQWEPALCLLLAWLVVYLCILRGTESTGKVVYFTASLPYCVLIIYLIRGLTLHGATNGLMYMFTPKIEQLANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNYENCLKKVSLLLTNTFDLEDGFLTASNLEQVKGYLASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCLVNCAIGMVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFESDLKAMTGRAVSWYWKVMWAGVSPLLIVSLFVFYLSDYILTGT-LKYQAWDASQGQLVTKDYPAYALAVIGLLVASSTMCIPLAAL 575

The following BLAST results are available for this feature:

BLAST of TCONS_00017112-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017112-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A20	9.135e-167	44.92	Sodium- and chloride-dependent transporter XTRP3 O...	[more]

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TCONS_00017112-protein (polypeptide) - C. hemisphaerica