TCONS_00017109-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017109-protein
Unique Name	TCONS_00017109-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	463

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017109-protein ID=TCONS_00017109-protein|Name=TCONS_00017109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MFHWRWTFVFVVALVIDDVISSQNCSTKCRCTKTFTYCLYQDITSEELVN
ILPTIPKTTEKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRI
GHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFD
KMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQST
LQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGLTL
ETVYLNLNLLEKLPNNLFKNTDIIRNVFLLDNPFQCSCQLATAVADARQN
LKLSSDKVHFGDCKLHYETIMSVEGLTVEALNCTACDLNQCPLMTNCTLE
ASEKDGYVCMKYIGDLVDQSETNSRHSLSNEQKISSHIYLIVAVISILIV
VCLIIAVILFIKSRQKRKAFKIDNKYIYEQVDNKRTPKLTNLKAKNSFNV
VVQTPVRMKQYFV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009567	XLOC_009567	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017109	TCONS_00017109	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	L_dom-like
IPR026906	LRR_5

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 104..127 e-value: 5.3 score: 15.5 coord: 248..270 e-value: 85.0 score: 5.6 coord: 176..199 e-value: 0.0026 score: 27.0 coord: 80..103 e-value: 0.014 score: 24.6 coord: 202..223 e-value: 9.6 score: 13.4 coord: 128..151 e-value: 14.0 score: 12.2 coord: 152..175 e-value: 0.028 score: 23.6 coord: 224..247 e-value: 0.015 score: 24.5
None	No IPR available	SMART	SM00365	LRR_sd22_2	coord: 80..101 e-value: 32.0 score: 11.5 coord: 56..79 e-value: 580.0 score: 1.2 coord: 104..127 e-value: 270.0 score: 3.9 coord: 224..245 e-value: 14.0 score: 14.2 coord: 152..170 e-value: 110.0 score: 7.0 coord: 176..197 e-value: 620.0 score: 1.0
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 60..117 e-value: 4.5E-11 score: 42.2
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 58..79 score: 5.348
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 82..103 score: 6.965
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 130..151 score: 7.35
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 249..270 score: 5.871
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 154..175 score: 7.312
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 226..247 score: 6.518
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 202..223 score: 7.296
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 106..127 score: 6.803
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 178..199 score: 7.389
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 13..167 e-value: 4.3E-31 score: 107.0
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 168..310 e-value: 9.6E-27 score: 92.9
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 25..291
IPR026906	Leucine rich repeat 5	PFAM	PF13306	LRR_5	coord: 144..271 e-value: 1.6E-16 score: 60.3

Blast

[Close]

BLAST of TCONS_00017109-protein vs. Swiss-Prot (Human)
Match: LRC15 (Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.255e-26
Identity = 75/224 (33.48%), Postives = 116/224 (51.79%), Query Frame = 0

Query:   60 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGLT-LETVYLNLNLLEKLPNNLFKNTDIIRNVFLLDN 282
            ++L L GN +  +    F HL  LT L+L  N LT +  R+   L  L++L L  N++  I         NL+ L L QN I ++    F    NL+ L L  N IS +  + F  L  L +L L  N +K +   +F     L+EL+L  N I+ +P  +F  L +L+++ LS N I+ I  GAF+GLT L  + L+ N L+ L  N+F+    ++N+ L +N
Sbjct:  152 KELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNN 375

HSP 2 Score: 97.8265 bits (242), Expect = 1.031e-21
Identity = 79/251 (31.47%), Postives = 112/251 (44.62%), Query Frame = 0

Query:   61 KLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLP-----------------DRIGHFLP-------RLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGL-TLETVYLNLNLLEKLPNNLFKNTDIIRNVFLLDNPFQC 286
            KL LG N +T ++   F HL  L  L L  N+LT +P                 ++IG   P        L+ L+L+ N I  +          L  L L  NS+K +    F  M NLREL L  N IS +  N F+ LR L  L LS N+I  I    F    +L+EL L  N +  +   +F  L  L+ I L +N + Q+    F  +  L  + L  N LE LP  +F +   +  + L DNP++C
Sbjct:  177 KLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNPWRC 427

HSP 3 Score: 92.4337 bits (228), Expect = 5.498e-20
Identity = 74/288 (25.69%), Postives = 130/288 (45.14%), Query Frame = 0

Query:   20 ISSQNCSTKCRCTKTFTYCLYQDITSEELVNILPTIPKTTEKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKT------------------------ISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGLT-LETVYLNLNLLEKLPNNLFKNTDIIRNVFLLDN 282
            ++   C ++C C++        + T   +V +   +P     L +    IT++N   F +++ L  L +  N+L+++       L  LR L L  N+++                         I   +     NL+ L L  N ++ I +  FD +  L +L LG+N ++ I+   F  L NL  L+L +N++  I    F   + LQEL L+ N+I  +  GLF+    L+ +YLS+N I+Q+    F  L  L  + L  N L++L   +F     +R ++L DN
Sbjct:   20 LAYHGCPSECTCSRASQV----ECTGARIVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDN 303

HSP 4 Score: 91.6633 bits (226), Expect = 1.120e-19
Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 0

Query:   60 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDN 235
            ++LYL  N I+Q+    F  L +L  L+L  N L +L   I   +P LR L L  N I ++      N   L+VL L +N I  I    F+ ++ LREL L  N + D++ N F  L NL  + L +N+++ +  ++F +   L  + L+ N++ ++P G+F  L KL  + L DN
Sbjct:  248 QRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDN 423

HSP 5 Score: 86.6557 bits (213), Expect = 3.676e-18
Identity = 71/228 (31.14%), Postives = 116/228 (50.88%), Query Frame = 0

Query:   60 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGLTLETVYLNLNLLE-KLPNNLFK-NTDI--IRNVFLLDNP 283
            ++L L  N+I  ++   F +   L  L L+ N +++LP  +   LP+L  L L  N +K +S        NLR L L  N I  + +N F  +  L+ L+L +NQIS I+   FNGL  L +L L  N ++ +  +VF+    LQ + L+ N++  +P  +F  +  L  I L +N +  +  G FD L          L E +L +N ++ ++DI  +RN  LL+ P
Sbjct:  224 QELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLG--------KLCELRLYDNPWRCDSDILPLRNWLLLNQP 443

The following BLAST results are available for this feature:

BLAST of TCONS_00017109-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017109-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRC15	7.255e-26	33.48	Leucine-rich repeat-containing protein 15 OS=Homo ...	[more]

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TCONS_00017109-protein (polypeptide) - C. hemisphaerica