TCONS_00017057-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017057-protein
Unique NameTCONS_00017057-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017057-protein ID=TCONS_00017057-protein|Name=TCONS_00017057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
MAVYFDYPIHPSEDEEFTNEVLAWHKSSPLLAIGSSSRNGKGIVKFYLDE
AEVVDGSSIEKDNTAPVQMVWHPSKKLLAVGWSNGEICIWNESDKDVHEA
PIFHKSTLTNIHWNGTGSRLITADQNGLICVWKIDQRGRLQQSPMFQNEV
GSPIVQMAFKIAVSIDAANDLVAAAKAAVNGDKDALDVFDWQKAGQSQLN
MSQAESIQMYFGTKDGTVYFMDDRGKCKKCYQLDNGIKHVLYYEVRDIIV
VITENLILTQHTLQVDGQFSEVSKAKLGGNATHFQASWAGSGLLATCSKE
RLARIIDIDNDQNYILNLNGNSAFVNGETINCLSYNAKKGVLAGGTNKGH
IAIWKNNLFKPDDPWDLQSPCEVEGGVQSIEWGGGGSLMASITDQSATIL
SESIMNVHFNQHVVAVQTAPNQLTVRTLPSSESTDLKTDIHIKGVYCTKN
FIAIWNSRKVAIYEISDNKSLIRSAGTFNSDAATVAMYEQNIYILEGEKI
SIRTFQV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009536XLOC_009536Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017057TCONS_00017057Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 311..355
e-value: 10.0
score: 10.7
coord: 93..133
e-value: 0.09
score: 21.9
coord: 52..91
e-value: 15.0
score: 9.6
coord: 268..307
e-value: 140.0
score: 3.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 104..142
score: 9.272
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 24..114
e-value: 2.1E-5
score: 24.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 11..262
e-value: 1.5E-19
score: 69.6
coord: 263..496
e-value: 5.6E-9
score: 34.9
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 59..142
score: 12.763
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 197..233
coord: 22..155
coord: 276..399

Blast
[Close]
BLAST of TCONS_00017057-protein vs. Swiss-Prot (Human)
Match: IF140 (Intraflagellar transport protein 140 homolog OS=Homo sapiens GN=IFT140 PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 9.020e-115
Identity = 191/516 (37.02%), Postives = 310/516 (60.08%), Query Frame = 0 
Query:    1 MAVYFDYPIHPSEDEEFTNEVLAWHKSSPLLAIGSSSRNGKGIVKFYLDEAEVVDGSSIEKDNTAPVQMVWHPSKKLLAVGWSNGEICIWNESDKDVHEAPIFHKSTLTNIHWNGTGSRLITADQNGLICVWKIDQRGRLQQSPMFQNEVGSPIVQMAFKIAVSIDAANDLVAAAKAAVNGDKDALDVFDWQKAGQ-SQLNMSQAESIQMYFGTKDGTVYFMDDRGKCKKCYQLDNGIKHVLYYEVRDIIVVITENLILTQHTLQVDGQFSEVSKAKLGGNATHFQASWA--GSGLLATCSKERLARIIDIDNDQNYILNLNGNSAFVNGETINCLSYNAKKGVLAGGTNKGHIAIWK---NNLFKP----DDPWDLQSPCEVEGGVQSIEWGGGGSLMASITDQSATILSESIMNVHFNQHVVAVQTAPNQLTVRTLPSSESTDLKTDIHIKGVYCTKNFIAIWNSRKVAIYEISDNKSLIRSAGTFNSDAATVAMYEQNIYILEGEKISIRTFQ 506
            MA+Y+D+ I  + D   +   ++WH   P LA+   S    G V  YL++ E V  + +E+       + WHP++ +LAVGW  GE+ ++N+ DK+ H  P+ H + +T + W+ +G+ L++ D+ G++ +W++DQRGR+Q +P+ ++E G  +    F++        DLV  AKAAV+GD+ ALD+F+W+K+   S L M   E +  +    DGTV+++D++GK  +    D+ I+ + Y E R+ +VV+TENL L+ +T+  +G+  EV K KL G  T  +A  A     LL     E   R  DI+  +NYIL+ +    F  GE +NC+ Y   KG+LA GT++G +A+W+   + L  P     D W LQ+P E++G +  I+WG   +L+A  +  S  ILSE  M+ HF+Q V A+Q +P+ L V  L +  +  L+TD+HI GV+ TK+ +A+WN R+VAI+E+S   + IRSAGTF  +   +AM+E+N+Y +E  ++ +RT+Q
Sbjct:    1 MALYYDHQIE-APDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVERPFRV-ASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLP---PPGEDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGK-TGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAMQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSG--AAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQ 508
The following BLAST results are available for this feature:
BLAST of TCONS_00017057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1409.020e-11537.02Intraflagellar transport protein 140 homolog OS=Ho... [more]
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