TCONS_00017053-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017053-protein
Unique Name	TCONS_00017053-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	951

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017053-protein ID=TCONS_00017053-protein|Name=TCONS_00017053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=951bp
REARQISISKNLEDAIPSFGSIQCLRCNCNGSKVAFISQNNFVTSAFLYI
WDVETDTVQCFNFATGEGIEQMDDNLTAAQEQLTSNIKGYVPSDIHWDSD
EAKLLVCEAIKSSLDKPSSNERNKPGGGFSRKVSNLKTKEPEPTNIIVTM
FSTPDHGLIVQDHFNKQKADYSFLGISTPWFYFAKGSLEHTEENEESEQA
KNEERIIQTPMRDFAGLEDCDETVKKAMTNFSYLSAIGNMDEAFKAIKTI
KRLDFSRLELDVLGFDAYRSGRKNVQRSGSVWENMARMCVKTKRLDVAMV
CLGNMGNAIAAKAVRECQREESDVNVQTAMLAIQIGMYKEAEELYKESGR
FDLLNEFYQASNQWSKALECADTHDRIHLRTTHYNYGKYLEDEGRIDEAI
KQFESSETYRIEVPRMLNEDYTRLENYIRRQNEPKLYKWFAQYLESSSDM
DEALQYYTMANDYLARVRIHCFCEEFDRAAELCDETGDKAASYHLARQFD
NNDEINKAIHYFSRAQAYSNAIRLAKDNEMDHELMNLALLSSQEDMLDSA
RYFEMKAMEDKAVILYHKGGRPSKAIDLAFKTEQFGALQLISEDLDENAD
PEVLRKCAEFFIDHEQYDKAVNLLVVAKKFEEALDMCLDHHITITEEMGE
KLTLPKDYEDAKYRLRLLEKLGEVAFKQGSYHLSTKKFTQAGNKIKAMKA
LLKSGDTEKIIFFAGVSRQKDIYIMAANYLQSLDWRKDPEIMKGIINFYT
KGRALDSLASFYDACAQVEMDEFQNYEKAFGALSESYKCLNKVKPKNQTE
HEDRVATIKARLTVMKKFIQAKKSYDSSIDESIKACIALLDDPDVEIAIR
VGDVYSFVVSHFTAAQDYQQAYNLMENMRQRFPHLKIQQYIKRKIIERIY
NELQIALPSSNQNNGGGRNQHRGGARDDSVEESEGEIDEEVDEIEDDDDM
I

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009535	XLOC_009535	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017053	TCONS_00017053	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR011990	TPR-like_helical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 4..146 e-value: 7.9E-4 score: 18.2
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 319..420 e-value: 1.4E-9 score: 37.1 coord: 657..904 e-value: 1.8E-6 score: 26.8 coord: 421..656 e-value: 8.1E-12 score: 44.4
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 337..519
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 908..951

Blast

[Close]

BLAST of TCONS_00017053-protein vs. Swiss-Prot (Human)
Match: IF140 (Intraflagellar transport protein 140 homolog OS=Homo sapiens GN=IFT140 PE=1 SV=1)

HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 443/962 (46.05%), Postives = 648/962 (67.36%), Query Frame = 0

Query:    1 REARQISISKNLEDAIPSFGSIQCLRCNCNGSKVAFI-SQNNFVTSAFLYIWDVETDTVQCFNFATGEGIEQMDDNLTAAQEQLTSN---------IKGYVPSDIHWDSDEAKLLVCEAIKSSLDKPSSNERNKPGGGFSRKVSNLKTKEPEPTNIIVTMFSTPDHGLIVQDHFNKQKADYSFLGISTPWFYFAKGSLEHTEENEESEQAKNEERII-QTPMRDFAGLEDCDETVKKAMTNFSYLSAIGNMDEAFKAIKTIKRLDFSRLELDVLGFDAYRSGRKNVQRSGSVWENMARMCVKTKRLDVAMVCLGNMGNAIAAKAVRECQREESDVNVQTAMLAIQIGMYKEAEELYKESGRFDLLNEFYQASNQWSKALECADTHDRIHLRTTHYNYGKYLEDEGRIDEAIKQFESSETYRIEVPRMLNEDYTRLENYIRRQNEPKLYKWFAQYLESSSDMDEALQYYTMANDYLARVRIHCFCEEFDRAAELCDETGDKAASYHLARQFDNNDEINKAIHYFSRAQAYSNAIRLAKDNEMDHELMNLALLSSQEDMLDSARYFEMKAME-DKAVILYHKGGRPSKAIDLAFKTEQFGALQLISEDLDENADPEVLRKCAEFFIDHEQYDKAVNLLVVAKKFEEALDMCLDHHITITEEMGEKLTLPKDYEDA--KYRLRLLEKLGEVAFKQGSYHLSTKKFTQAGNKIKAMKALLKSGDTEKIIFFAGVSRQKDIYIMAANYLQSLDWRKDPEIMKGIINFYTKGRALDSLASFYDACAQVEMDEFQNYEKAFGALSESYKCLNKVKPKNQTEHEDRVATIKARLTVMKKFIQAKKSYDSSIDESIKACIALLDDPDVEIAIRVGDVYSFVVSHFTAAQDYQQAYNLMENMRQRFPHLKIQQYIKRKIIERIYNELQIALPSSNQNNGGGRNQHRGGARDDSVEESEGEIDEEVDEIEDDD 948
            REA+     ++L + +P  G I  LRC+ +GS ++ + S+ +    + +  +DVE DTV  F+F TG    Q+D   T +  +  +N         +K YVP +  WD  E +L VCEA++ +      +   +P  G +   +++         +I++ F + +HG ++ + F +    +S LG+  P++YF +   E   E+E      +  +++ + P+RDF GLEDCD+  + AM +FS+   IG+MDEAFK+IK IK                          S +VWENMARMCVKT+RLDVA VCLGNMG+A  A+A+RE + +E ++  + A+LA Q+GM ++AE+LY++  R DLLN+FYQA+ +W +AL+ A+ HDR+HLR+T++ Y  +LE       A+  +E S+T+R EVPRML+ED   LE Y+ +  +  L++W+AQYLES  +MD AL YY +A D+ + VRIHCF     +AA++ +ETG+ AASYHLARQ+++ +E+ +A+H+++RAQA+ NAIRL K+N +D +LMNLALLSS EDM+++ARY+E K ++ D+AV+LYHK G  SKA++LAF T+QF ALQLI+EDLDE +DP +L +C++FFI+H QY++AV LL+ A+K++EAL +CL  +++ITEEM EK+T+ KD  D   + R  LLE++ +   +QGSYHL+TKK+TQAGNK+KAM+ALLKSGDTEKI FFA VSRQK+IYIMAANYLQSLDWRK+PEIMK II FYTKGRALD LA FYDACAQVE+DE+QNY+KA GAL+E+YKCL K K K+  + E R+A +++R+ ++K+FIQA+++Y     ESIK C  LL++PD++  IR+GDVY F+V H+   ++YQ AY  +E MR+R P   +  Y+  + ++ ++  L + LP +               R +S+E++  E+DEEV E  DDD
Sbjct:  551 REAKAHCSCRSLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKICFYDVEMDTVTVFDFKTG----QIDRRETLSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQDGRAGPAADV---------LILSFFISEEHGFLLHESFPRPATSHSLLGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIK--------------------------SEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE-QEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGHLEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQ----------VRHNSMEDAR-ELDEEVVEEADDD 1461

The following BLAST results are available for this feature:

BLAST of TCONS_00017053-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017053-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IF140	0.000e+0	46.05	Intraflagellar transport protein 140 homolog OS=Ho...	[more]

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TCONS_00017053-protein (polypeptide) - C. hemisphaerica