TCONS_00017041-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017041-protein
Unique NameTCONS_00017041-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017041-protein ID=TCONS_00017041-protein|Name=TCONS_00017041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MVKKNNKQQLAKQNNKKSNVKSRLGIKNNPNLGKFNKSKTTTKAIIKKIE
NGGPGSKKELKLFTKHFDARSKIKPKQSDTRSHKQGGRNDGGNLTKKNNQ
KTKSDVRAKQQQQQQQQQKQKDKKNTKKHSTTVQQNSDRLSTFTGKSIHI
VAKNDLIPKARETHVKGKMLSVTATNSKTRKQRRSPQKQKQKQDSILSKS
FKLRTTRQAMEEPEDYITPSSILSKQQQHQNSLPAKIVISNLHQNVTHDD
IKELFGAVGALREARLKNLGTAEVVYESAEDAFAAYNKYNTRNLDGQPMI
LKITTVQEAPEPQPMPSQSSRSSMPYYENRPSQIYSSGGVNGGATPLNKR
FNSGASYTSNAPAAKPVVFTVRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009530XLOC_009530Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017041TCONS_00017041Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034784PDIP3_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
NoneNo IPR availableGENE3D3.30.70.330coord: 166..327
e-value: 6.8E-16
score: 57.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..341
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..140
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 236..302
e-value: 1.3E-11
score: 54.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 237..298
e-value: 1.3E-10
score: 40.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 235..306
score: 11.827
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 226..308
IPR034784PDIP3, RNA recognition motifCDDcd12681RRM_SKARcoord: 236..303
e-value: 1.30127E-27
score: 102.731

Blast
[Close]
BLAST of TCONS_00017041-protein vs. Swiss-Prot (Human)
Match: PDIP3 (Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.681e-17
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 0 
Query:  236 KIVISNLHQNVTHDDIKELFGAVGALREARLKNLGTAEVVYESAEDAFAAYNKYNTRNLDGQPM 299
            K+ ++NLH  VT +DI ELF   GAL+ ARL + G AEVV+   +DA  AY KYN R LDGQPM
Sbjct:  281 KMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPM 344
The following BLAST results are available for this feature:
BLAST of TCONS_00017041-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDIP34.681e-1756.25Polymerase delta-interacting protein 3 OS=Homo sap... [more]
back to top