TCONS_00016926-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016926-protein
Unique NameTCONS_00016926-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016926-protein ID=TCONS_00016926-protein|Name=TCONS_00016926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MNPKCHRCQKTVYPVEKMLCLDKAWHKGCFNCEVCHMKLSMKTYKGYNKL
PYCGPHYPTTKHTTVAETPEQLRLKEATSNQSGLVYQKNHQENLSKFTTV
SDDPETLRNKKIQAQTSGLVYQKDHQENLAKFTAVSDDPETVRNKKMQAQ
QSQAVYQKNHQEELGKFTAVTDDPELVRNRKMQEQASTIAYKGTAPPGSR
EADGFVPDLESQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009481XLOC_009481Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016926TCONS_00016926Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR000900Nebulin_repeat
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 4..56
e-value: 1.1E-13
score: 61.4
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 5..58
e-value: 4.5E-11
score: 42.7
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 5..39
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 3..63
score: 12.791
IPR000900Nebulin repeatSMARTSM00227nebu_4coord: 167..197
e-value: 0.012
score: 24.8
coord: 62..92
e-value: 0.087
score: 21.9
coord: 97..127
e-value: 0.0032
score: 26.7
coord: 132..162
e-value: 4.3E-5
score: 32.9
IPR000900Nebulin repeatPROSITEPS51216NEBULINcoord: 166..192
score: 9.539
IPR000900Nebulin repeatPROSITEPS51216NEBULINcoord: 96..130
score: 9.618
IPR000900Nebulin repeatPROSITEPS51216NEBULINcoord: 131..165
score: 9.801
IPR000900Nebulin repeatPROSITEPS51216NEBULINcoord: 61..95
score: 8.416
NoneNo IPR availableGENE3D2.10.110.10coord: 1..188
e-value: 5.6E-15
score: 54.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..213
NoneNo IPR availableCDDcd09447LIM_LASPcoord: 5..57
e-value: 8.44151E-32
score: 110.543
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 2..30

Blast
[Close]
BLAST of TCONS_00016926-protein vs. Swiss-Prot (Human)
Match: LASP1 (LIM and SH3 domain protein 1 OS=Homo sapiens GN=LASP1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.172e-40
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 0 
Query:    1 MNPKCHRCQKTVYPVEKMLCLDKAWHKGCFNCEVCHMKLSMKTYKGYNKLPYCGPHYPTTKHTTVAETPEQLRLKEATSNQSGLVYQKNHQENLSK-FTTVSDDPETLRNKKIQAQTSGLVYQKDHQEN 128
            MNP C RC K VYP EK+ CLDK WHK CF+CE C M L+MK YKGY K PYC  HYP    T VA+TPE LRLK+ +  QS + Y++  ++N  K F+ V+D PE  R KK Q Q S + Y ++ +++
Sbjct:    1 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFEKS 129
The following BLAST results are available for this feature:
BLAST of TCONS_00016926-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LASP11.172e-4051.16LIM and SH3 domain protein 1 OS=Homo sapiens GN=LA... [more]
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