TCONS_00016923-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016923-protein
Unique NameTCONS_00016923-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016923-protein ID=TCONS_00016923-protein|Name=TCONS_00016923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MLANLAGGTCKHKSKTFSKKVARRLDVPQEVINFSKYLVSTNLVVLSIMT
TCYKCGDEGHYAYACPDQDGQVKSSADRECYKCGELGHISRDCGLALREG
VDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECEAEEGR
CYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLA
SVSCYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGEKLQMTCYKCNT
PGHYARDCENEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009478XLOC_009478Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016923TCONS_00016923Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 51..67
e-value: 0.0017
score: 27.6
coord: 223..239
e-value: 9.0E-4
score: 28.5
coord: 176..192
e-value: 1.0E-5
score: 35.0
coord: 203..219
e-value: 8.1E-4
score: 28.7
coord: 130..146
e-value: 4.2E-4
score: 29.6
coord: 79..95
e-value: 0.0034
score: 26.4
coord: 150..166
e-value: 1.2E-4
score: 31.4
coord: 106..122
e-value: 3.1E-5
score: 33.4
coord: 244..260
e-value: 5.9E-4
score: 29.1
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 211..230
e-value: 4.3E-12
score: 45.3
coord: 186..210
e-value: 6.0E-14
score: 51.3
coord: 89..122
e-value: 1.1E-13
score: 50.4
coord: 140..158
e-value: 3.6E-13
score: 48.8
coord: 63..88
e-value: 1.7E-13
score: 49.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 159..185
e-value: 2.2E-14
score: 52.5
coord: 231..262
e-value: 5.1E-13
score: 48.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 106..122
e-value: 1.4E-7
score: 31.2
coord: 79..93
e-value: 4.3E-7
score: 29.6
coord: 51..66
e-value: 6.2E-5
score: 22.8
coord: 223..237
e-value: 9.8E-6
score: 25.3
coord: 244..258
e-value: 1.9E-6
score: 27.6
coord: 130..144
e-value: 5.6E-6
score: 26.1
coord: 150..166
e-value: 1.2E-5
score: 25.1
coord: 203..217
e-value: 5.9E-6
score: 26.0
coord: 176..190
e-value: 3.9E-8
score: 32.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 8..62
e-value: 3.7E-7
score: 29.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 123..139
e-value: 9.2E-7
score: 28.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 130..144
score: 11.087
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 177..192
score: 11.252
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 204..219
score: 10.872
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 150..166
score: 10.576
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 107..122
score: 11.021
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 224..237
score: 10.015
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 52..67
score: 10.329
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 245..260
score: 10.411
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 80..93
score: 10.839
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 172..220
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 103..146
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 50..94
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 222..261

Blast
[Close]
BLAST of TCONS_00016923-protein vs. Swiss-Prot (Human)
Match: CNBP (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.518e-36
Identity = 79/191 (41.36%), Postives = 107/191 (56.02%), Query Frame = 0 
Query:   52 CYKCGDEGHYAYACP-------------------DQDGQ-VKSSADRECYKCGELGHISRDCGLALREGVDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECE-AEEGRCYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLASVSCYRCGEKGHMAKNCESSA 221
            C+KCG  GH+A  CP                   D+  Q V SS    CY+CGE GH+++DC L          +CYNCGR GHI++DC++ +      CY CGK GH AR+C+ A+E +CY+CG+ GHI+ DCT+ +        CY+CGETGH A +C         + V+CYRCGE GH+A+ C   A
Sbjct:    6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDL-------QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 175

HSP 2 Score: 114.005 bits (284), Expect = 2.619e-31
Identity = 69/183 (37.70%), Postives = 99/183 (54.10%), Query Frame = 0 
Query:   79 ECYKCGELGHISRDCGLALREGVDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECEAEEGRCYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLASVSCYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGEKLQMTCYKCNTPGHYARDCENE 261
            EC+KCG  GH +R+C      G                 R  +   ++    CY+CG+SGH A++C+ +E  CYNCG+GGHI  DC E +  ++ E  CY CG+ GH ARDC++ +  +      CY CGE GH+ K+C  +   CY C + GH A  C +  ++ CY+C   GH AR+C  E
Sbjct:    5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRG---GFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK--REREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174

HSP 3 Score: 79.7221 bits (195), Expect = 2.306e-18
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0 
Query:  170 MQQNESTCYKCGETGHFARDCENE---------------ENDRGLASVS------CYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGE---KLQMTCYKCNTPGHYARDCENEE 262
            M  NE  C+KCG +GH+AR+C                   +DRG   VS      CYRCGE GH+AK+C+   + CYNC + GH A++C E   + +  CY C  PGH ARDC++ +
Sbjct:    1 MSSNE--CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD 115
The following BLAST results are available for this feature:
BLAST of TCONS_00016923-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNBP2.518e-3641.36Cellular nucleic acid-binding protein OS=Homo sapi... [more]
back to top