TCONS_00016911-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016911-protein
Unique NameTCONS_00016911-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016911-protein ID=TCONS_00016911-protein|Name=TCONS_00016911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
LIERCFVKCITPSTPLICRSSKGGNLNELVDCLRGTGDESRDQIENHLPN
KKLDQTSQEDLQILHQSSCDIHKFIQLFHQPYILLTQPDVSPIWCPAAND
YQIHEIRNTKIGEIGKHLQYLKSTGIKIFVCLLPMVTTLNVIHAAHIVEV
SSDDYLWILLENEISKFDVEFEPINVFYLQTKNESFCPMSKSSELQTQSV
LTIKQKSKDHPTRSTLQTIGKFSENKIEKSDELIRYTTNFRPQFFIKYPQ
IRIVTAIDPPFVSSIPLYNEKCHGRKCMKYVKNLQTGDRKVETFCCVGLC
IDMMSYLETDMKAQFEIWLVEDGFYGAKINGTWNGMVSDVVQNKADVIIA
PFLMTRDRLLALDFTDESYLNGGMALVTVAQKSNMTLFNFRTFQPLSASM
WFVLLSLTLXFQPLSASMWFVLLSLTLAASLIVYFAEKLSIKTPVYPLWE
SVNYFTGLAFARDIGALNPVKLGSRVIGISVALFMLIVMSTYTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009471XLOC_009471Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016911TCONS_00016911Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 283..342
e-value: 8.3E-5
score: 32.0
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 290..377
e-value: 1.2E-16
score: 60.8
NoneNo IPR availableGENE3D3.40.190.10coord: 247..389
e-value: 5.9E-19
score: 67.5
NoneNo IPR availableGENE3D3.40.50.2300coord: 66..246
e-value: 3.2E-5
score: 23.5
NoneNo IPR availableGENE3D1.10.287.70coord: 406..494
e-value: 1.1E-5
score: 24.4
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 294..401

Blast
[Close]
BLAST of TCONS_00016911-protein vs. Swiss-Prot (Human)
Match: NMDE1 (Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens GN=GRIN2A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.802e-19
Identity = 64/250 (25.60%), Postives = 122/250 (48.80%), Query Frame = 0 
Query:  250 QIRIVTAIDPPFV--SSIPLYNEKC--HGRKCMKYVK-NLQTGDRKVETFCCVGLCIDMMSYLETDMKAQFEIWLVEDGFYGAKINGTWNGMVSDVVQNKADVIIAPFLMTRDRLLALDFTDESYLNGGMALVTVAQKSNMTLFNFRTFQPLSASMWFVLLSLTLXFQPLSASMWFVLLSLTLAASLIVYFAEKLSIKTPVYPLWESVNYFTGLAFARDIGALNPVKLGSRVIGISVALFMLIVMSTYTA 494
             + IVT  + PFV    I    E C  +   C K+VK N  T +      CC G CID++  L   +K  ++++LV +G +G K+N  WNGM+ +VV  +A + +    +  +R   +DF+   ++  G+++  +  +SN T+      +P SAS+W ++  + L    ++  ++     +    +L    A+  +   P + + +++    GL F   +   NP    S+++    A F +I +++YTA
Sbjct:  405 HLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFS-VPFVETGISV--MVSRSNGTVSPSAFLEPFSASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL----AKGKAPHGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTA 647
The following BLAST results are available for this feature:
BLAST of TCONS_00016911-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE11.802e-1925.60Glutamate receptor ionotropic, NMDA 2A OS=Homo sap... [more]
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