TCONS_00016837-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016837-protein
Unique NameTCONS_00016837-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016837-protein ID=TCONS_00016837-protein|Name=TCONS_00016837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp
MAFWGDSGGFLDDLETDGTEIGGGVDAGKSNQYEVGRDGLIFLIDATASM
FVKGEDEEGTPFQKSITCAKNVLMSKIISSDKDLVGVILFGTEKDQNSSD
FPNVYDLQALDMPDADRILQLEQLESSDGVQSFGNDYGNSDGFALSDALW
ACSKMFASTTYKISHKRILLFTNNDDPHRVDNEKKKRAIRKAKDLSDLGI
DLQLLHLKSEGEFDVNKFYIDIMDDDEEEGDLPDPAEKLDELMMRVRMKE
YKKRATASVAFQLGDGMNMGVSIYSLNRPQKKGSYIHVDSRTNEEVQCVT
KYICRDTGQELLPTDIKFYQDFAGEKVIFEKEEVAQMKSLVDPGLTLIGF
KPKDTLKLHYHIKPSSFLYPDDKKVEGSAALFTSLLNRCSARNVIPICTF
ARSNTAPRYVALVPQPEEIDEHGLQINPPGFHMVYLPYADDIRKLDVEEH
PKANEQQIDKMKEIVDKLKFTYTSDSFENPALQKFYRCLEAFALDRDEVE
TFDDLTEPNTERMDKKAGSLVDEFKDMVFPPDYTGFPAKTTGKRPASKSA
DGNATKKVKAEEVDVDFHESAKRGNLNKLTVPVLKAFCKDQKLKPSSQKK
ADLIQAINEHFSLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009432XLOC_009432Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016837TCONS_00016837Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006164Ku70/Ku80_beta-barrel_dom
IPR002035VWF_A
IPR027388Ku70_bridge/pillars_dom
IPR005161Ku_N
IPR005160Ku_C
IPR006165Ku70
IPR016194SPOC-like_C_dom
IPR003034SAP_dom
Vocabulary: Biological Process
TermDefinition
GO:0006303double-strand break repair via nonhomologous end joining
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0004003ATP-dependent DNA helicase activity
GO:0003684damaged DNA binding
GO:0042162telomeric DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0043564Ku70:Ku80 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006303 double-strand break repair via nonhomologous end joining
biological_process GO:0000723 telomere maintenance
cellular_component GO:0043564 Ku70:Ku80 complex
cellular_component GO:0005634 nucleus
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0042162 telomeric DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006164Ku70/Ku80 beta-barrel domainSMARTSM00559ku_4coord: 308..453
e-value: 1.3E-43
score: 160.9
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 264..459
e-value: 1.5E-50
score: 171.7
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 36..244
e-value: 1.9E-4
score: 30.8
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 37..250
e-value: 1.8E-61
score: 207.1
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 36..252
IPR027388Ku70, bridge and pillars domainGENE3D4.10.970.10coord: 281..326
e-value: 7.1E-20
score: 70.7
IPR005161Ku70/Ku80, N-terminal alpha/betaPFAMPF03731Ku_Ncoord: 40..255
e-value: 5.3E-53
score: 179.9
IPR005160Ku70/Ku80 C-terminal armPFAMPF03730Ku_Ccoord: 472..559
e-value: 1.4E-22
score: 80.1
IPR006165Ku70TIGRFAMTIGR00578TIGR00578coord: 31..612
e-value: 4.3E-210
score: 696.9
IPR006165Ku70PIRSFPIRSF003033Ku70coord: 12..613
e-value: 2.2E-174
score: 578.9
NoneNo IPR availableGENE3D1.10.1600.10coord: 439..532
e-value: 6.7E-30
score: 103.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 536..555
NoneNo IPR availableCDDcd01458vWA_kucoord: 37..249
e-value: 6.93477E-54
score: 183.333
NoneNo IPR availableCDDcd00788KU70coord: 254..528
e-value: 3.69515E-107
score: 326.159
IPR016194SPOC-like, C-terminal domainGENE3D2.40.290.10coord: 327..438
e-value: 8.5E-35
score: 119.1
IPR016194SPOC-like, C-terminal domainSUPERFAMILY100939SPOC domain-likecoord: 254..532
IPR003034SAP domainGENE3D1.10.720.30coord: 566..611
e-value: 4.0E-12
score: 45.3
IPR003034SAP domainSUPERFAMILY68906SAP domaincoord: 565..612

Blast
[Close]
BLAST of TCONS_00016837-protein vs. Swiss-Prot (Human)
Match: XRCC6 (X-ray repair cross-complementing protein 6 OS=Homo sapiens GN=XRCC6 PE=1 SV=2)

HSP 1 Score: 482.641 bits (1241), Expect = 2.794e-164
Identity = 265/580 (45.69%), Postives = 372/580 (64.14%), Query Frame = 0 
Query:   36 GRDGLIFLIDATASMFVKGEDEEGTPFQKSITCAKNVLMSKIISSDKDLVGVILFGTEKDQNSSDFPNVYDLQALDMPDADRILQLEQLESSDGVQSFGNDYGNSDGFALSDALWACSKMFASTTYKISHKRILLFTNNDDPHRVDNEKKKRAIRKAKDLSDLGIDLQLLHLKSEGEFDVNKFYIDIMDDDEEEGDLP---DPAEKLDELMMRVRMKEYKKRATASVAFQLGDGMNMGVSIYSLNRPQKKGSYIHVDSRTNEEVQCVTKYICRDTGQELLPTDIKFYQDFAGEKVIFEKEEVAQMKSLVDPGLTLIGFKPKDTLKLHYHIKPSSFLYPDDKKVEGSAALFTSLLNRCSARNVIPICTFA-RSNTAPRYVALVPQPEEIDEHGLQINPPGFHMVYLPYADDIRKLDVEEHPKANEQQIDKMKEIVDKLKFTYTSDSFENPALQKFYRCLEAFALDRDEVETFDDLTEPNTERMDKKAGSLVDEFKDMVFPPDYTGFPAKTTGKRPASKSADGNATKKVKAEEVDVDFHESAKRGNLNKLTVPVLKAFCKDQKLKPSSQKKADLIQAINEHF 611
            GRD LIFL+DA+ +MF    ++E TPF  SI C ++V +SKIISSD+DL+ V+ +GTEKD+NS +F N+Y LQ LD P A RIL+L+Q +   G + F +  G+   ++LS+ LW C+ +F+   +K+SHKRI+LFTN D+PH  D+ K  RA  KA DL D GI L L+HLK  G FD++ FY DI+   E+E DL    + + KL++L+ +VR KE +KRA + +  +L   + + V IY+L +   K   I +   TNE V+  T+     TG  LLP+D K  Q +   ++I EKEE  ++K   DPGL L+GFKP   LK H++++PS F+YP++  V GS+ LF++LL +C  + V  +C +  R N  P +VALVPQ EE+D+  +Q+ PPGF +V+LP+ADD RK+   E   A  +Q+ KMK IV+KL+FTY SDSFENP LQ+ +R LEA ALD  E E   DLT P  E M+K+ GSLVDEFK++V+PPDY   P     KR       G+   KV+  E ++  H S  +G L K TVP+LK  C+   LK S  KK +L++A+ +HF
Sbjct:   34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDE-DLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYN--PEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHIS--KGTLGKFTVPMLKEACRAYGLK-SGLKKQELLEALTKHF 607
The following BLAST results are available for this feature:
BLAST of TCONS_00016837-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC62.794e-16445.69X-ray repair cross-complementing protein 6 OS=Homo... [more]
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