TCONS_00016789-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016789-protein
Unique NameTCONS_00016789-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016789-protein ID=TCONS_00016789-protein|Name=TCONS_00016789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MTNIESPMEDEVATNSGNIISKILLINKQSEKRLTKELYNETMVNTYVSR
NAQNNEFFVQRPKSHVIDTQRGWATLPKDLGSSVHHNNNFIHQHQDVNKQ
QQHRYRSSTIGFKEAVKSKFTIFGTLLRPRKLRKGVKKKTPKRGDENQSS
SKQKDVDVSKHSEPLNYNDAGELVSGQLENLIHLMTPTKEYYPDKKYIFT
FLLCSRLFMPPASLLRKLVDNIKVVVEKDKSVEQEVFRKFVNLLLDWSKQ
FPYDFKDXDGRFEINHDRLKTFSI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009400XLOC_009400Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016789TCONS_00016789Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000651Ras-like_Gua-exchang_fac_N
IPR023578Ras_GEF_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.870.10coord: 139..270
e-value: 2.0E-13
score: 49.9
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalPFAMPF00618RasGEF_Ncoord: 174..259
e-value: 1.2E-11
score: 44.6
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalPROSITEPS50212RASGEF_NTERcoord: 169..274
score: 19.328
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalCDDcd06224REMcoord: 178..272
e-value: 2.82029E-10
score: 54.726
IPR023578Ras guanine nucleotide exchange factor domainSUPERFAMILY48366Ras GEFcoord: 161..259

Blast
[Close]
BLAST of TCONS_00016789-protein vs. Swiss-Prot (Human)
Match: RGF1A (Ras-GEF domain-containing family member 1A OS=Homo sapiens GN=RASGEF1A PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.198e-19
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:  171 GELVSGQLENLIHLMTPTKEYYPDKKYIFTFLLCSRLFMPPASLLRKLVDNIKVVVEKDKSVE--------QEVFRKFVNLLLDWSKQFPYDFKDXDGRFEI 264
            G L+SG LE L+  + PT +YYPD+ YIFTFLL SR+FMPP  LL ++    ++ VE+ + +E        +    K V LL +W++ FPYDF+D     E+
Sbjct:   43 GHLISGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFMPPHDLLARVG---QICVEQKQQLEAGPEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAEL 141
The following BLAST results are available for this feature:
BLAST of TCONS_00016789-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGF1A3.198e-1942.16Ras-GEF domain-containing family member 1A OS=Homo... [more]
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