TCONS_00016688-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016688-protein
Unique NameTCONS_00016688-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016688-protein ID=TCONS_00016688-protein|Name=TCONS_00016688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1045bp
MAINKTSFSSVDFVGERHWEGSTPRSPRAASFGGVERIRSSSFDGFHSKN
FTDATLKYPEWNASSLGINRIGKLAILAAKRGFMVIDFDYPNKPKKYLCN
FKWEPGSLEWNPHHANDDLFASVMNQKIDIWDINTLQNSSHPQSTLSGHT
RAISNMNWNYFDPNSLLTCSMDTYINLWDIRKNKRPASTFTTVAGSSQVK
WNRKNNHLFGSAHDGDIRIWDIRKGNVPLVYIAGHLARIHAFDWCPHKEE
FFVTASQDSTVKVWNMKTPKQSWASINNGAPVWKAKYTPFGNGLVTILVP
QLRRTENSMFLWNMSDFKTPVNKFVGHEDVVLEFHWRTQRKDEHEEYQLV
SWSKDQSLRLWRASKKNIQSITGEPYTRLSEEAMDGSLLSIDNSHFEDKK
KTKKHVNSPDSPPMMSSTYKDPSTFKENINNQMETENKPLGRPEKLDLVG
LNLMDTKPYVQSPLSPGRLMSPMSRGRGFHGNNASFSPDGGEGAHGYMTP
TQVLHQEFTLLNVNSPYFKVEKKDSEARLCVIAVRTQYIFFKLHVTFPMK
YPDKDPPVFQFSKDSQIGDGSKQNIVNALREISTSHVNRNRPCLEACLRR
LRYVIENIEETTSQLSGDSPSVLQRTGSYDYKNGEVGHDMTDSTVPFPRT
CGARFCSVGDKLVVFSRPEKYNNIFVAERSLRSMSALNAYLQTNSNDVFD
NSGENQLGTLRKKPKAIGLVYISNTSLLIPVSKELAQNYALHGDDPSALC
LRNAELADKVMRKDLVQTWTLLSKILSKEVGPDSSSSFEKVPWACHPFGR
RMINSLFDYYERLKDVQTLAIMSCLLDKQHLPEDIQELSKITKIVDVEED
KPPTRPSTRFSNPDSFQVSPEFSPYDVYNRSSVGQDDSPLNFAPEEKSYD
PEEELRKQHSENCRLLNPKETFRYDQFKRNYSEILYRWDMQAQRTEVMKF
CTEQHEEKRIMDIVLDCNSCNTQRNNPCCAKCKSFIVKCSVCRIGVRGLL
SFCMTCGHGGHMYHLIDWFKQNDWCATGCGCYCLRSGLASAPYNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009325XLOC_009325Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016688TCONS_00016688Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR016135UBQ-conjugating_enzyme/RWD
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR006575RWD-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 349..363
score: 34.04
coord: 252..266
score: 36.51
coord: 166..180
score: 35.14
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 183..221
e-value: 0.51
score: 18.9
coord: 317..362
e-value: 2.1
score: 15.0
coord: 225..265
e-value: 1.0E-5
score: 35.0
coord: 139..179
e-value: 3.8E-5
score: 33.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 142..179
e-value: 0.034
score: 14.9
coord: 233..265
e-value: 0.025
score: 15.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 199..230
score: 9.506
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 232..274
score: 12.647
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 146..188
score: 11.344
NoneNo IPR availableGENE3D1.10.10.670coord: 259..299
e-value: 2.2E-5
score: 23.7
NoneNo IPR availableGENE3D2.40.50.140coord: 302..371
e-value: 1.7E-5
score: 23.9
NoneNo IPR availablePFAMPF17120Zn_ribbon_17coord: 987..1035
e-value: 3.1E-9
score: 36.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 847..901
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 394..422
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 33..258
e-value: 3.1E-29
score: 101.5
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 372..619
e-value: 1.0E-5
score: 25.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 208..222
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 166..180
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 107..371
score: 25.997
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 54..364
IPR006575RWD domainPROSITEPS50908RWDcoord: 506..608
score: 11.008

Blast
[Close]
BLAST of TCONS_00016688-protein vs. Swiss-Prot (Human)
Match: WDR59 (GATOR complex protein WDR59 OS=Homo sapiens GN=WDR59 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 5.055e-90
Identity = 151/397 (38.04%), Postives = 246/397 (61.96%), Query Frame = 0 
Query:   53 DATLKYPEWNASSLGINRIGKLAILAAKRGFMVIDFDYPNKPKKYLC-NFKWEPGSLEWNPHHANDDLFASVMNQKIDIWDINTLQNSSHPQSTLSGHTRAISNMNWNYFDPNSLLTCSMDTYINLWDIRKNKRPASTFTTVAGSSQVKWNRKNNHLFGSAHDGDIRIWDIRKGNVPLVYIAGHLARIHAFDWCPHKEEFFVTASQDSTVKVWNMKTPKQSWASINNGAPVWKAKYTPFGNGLVTILVPQLRRTENSMFLWNMSDFKTPVNKFVGHEDVVLEFHWRTQRKDEHEEYQLVSWSKDQSLRLWRASKKNIQSITGEPYTRLSEEAMDGSLLSIDNSHFEDKKKTKKHVNSPDSPPMMSSTYKDPSTFKENINNQMETENKP--LGRPEKL 446
            +  +++ +  A+++ ++ +G+ A+L+ +R   +++ D P +  + +    KW+ G+++WNPH +    FA+  NQ++D++       S    +TL GHTR IS+++W  F+P+ L+T S+DTYI +WDI+  ++P    + VAG+SQVKWN+KN +   ++HDGD+RIWD RK +  + Y+A HL++IH  DW P  E    T+SQD++VK W+ + P++    +    PVWKA+YTPF NGLVT++VPQLRR ENS+ LWN+ D  TPV+ FVGH+DVVLEF WR Q K+  ++YQLV+WS+DQ+LR+WR   +  +    +    + E     SLL           + +K +++ D+    ++++ +    KE+    +  E K   LG P+ L
Sbjct:    9 NVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYKWK--DGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKNANCLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRR-ENSLLLWNVFDLNTPVHTFVGHDDVVLEFQWRKQ-KEGSKDYQLVTWSRDQTLRMWRVDSQMQRLCANDILDGVDEFIESISLL----------PEPEKTLHTEDTDHQHTASHGEEEALKEDPPRNLLEERKSDQLGLPQTL 391

HSP 2 Score: 293.508 bits (750), Expect = 3.076e-84
Identity = 191/592 (32.26%), Postives = 291/592 (49.16%), Query Frame = 0 
Query:  502 QVLHQEFTLLNVNSPYFKVEKKDSEARLCVIAVRTQYIFFKLHVTFPMKYPDKDPPVFQFSKDSQIGDGSKQNIVNALREISTSHVNRNRPCLEACLRRLRYVIE---NIEETTSQ--------LSGDSPSVLQRTGSYDYKNGEVGHDMTDSTVPFPRTCGARFCSVGDKLVVFSRP-EKYNNIFVAERSLRSMSALNAY---------LQTN----------------------SNDVFDNSGENQLGTLR-------KKPKAIGLVYISNTSLLIPVSKELAQNYALHGDDPSALCLRNAELADKVMRKDLVQTWTLLSKILSKEVGPDSSSSFEKVPWACHPFGRRMINSLFDYYERLKDVQTLAIMSCLLDKQH----LPEDIQELSKITKIVDVEEDKPPTRPSTRFS----NPDSFQVSPEFSPYDVYNRSSVGQDDSPLNFAPEEKSY-DPEEELRKQHSENCRLLNPKETFRYDQFKRNYSEILYRWDMQAQRTEVMKFCTEQHEEKRIMDIVLDCNSCNTQRNNPCCAKCKSFIVKCSVCRIGVRGLLSFCMTCGHGGHMYHLIDWFKQNDWCATGCGCYCL 1034
            Q L QEF+L+NV      VE  D+  R C ++V       K+ V FP +YP+   P FQF   + I    K  ++  L++ +   V R + CLE CLR+L   +E   N E++ S         ++   P+  + T +Y            D+ +PFPRT GARFC  G  LV F+RP   +  +   E + RS+SAL+AY         ++T                       S+  +      +  + R       ++ KA G V I + + L+PV K L + Y L+ +D    C +NA  A  V RKDLVQ W+L +      +GP S    E  PWA HPFGR+++ SL  +Y RL+DVQTLA++  + + Q     LP         +  + V   + P+  S+       +P         +  +  + SS   + SP        +Y DP E  R QH +N RLL+P  T ++D FK+ Y EILYRW ++ +R EV+KF +   +  + ++  + C+ C ++     CA CK F  +C++C + VRG  +FC+TCGHGGH  H+++WF+  + C TGCGC+CL
Sbjct:  389 QTLQQEFSLINVQIRNVNVEM-DAADRSCTVSVHCSNHRVKMLVKFPAQYPNNAAPSFQFINPTTITSTMKAKLLKILKDTALQKVKRGQSCLEPCLRQLVSCLESFVNQEDSASSNPFALPNSVTPPLPTFARVTTAYG--------SYQDANIPFPRTSGARFCGAG-YLVYFTRPMTMHRAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERKSRRWKSKREGSDSGNRQIKAAGKVIIQDIACLLPVHKSLGELYILNVNDIQETCQKNAASALLVGRKDLVQVWSLATVATDLCLGPKSDPDLE-TPWARHPFGRQLLESLLAHYCRLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRSSNLVVSHSRYPSFTSSGSCSSMSDPGLNTGGWNIAGREAEHLSSPWGESSPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFKKCYGEILYRWGLREKRAEVLKFVSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHCL 969
The following BLAST results are available for this feature:
BLAST of TCONS_00016688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR595.055e-9038.04GATOR complex protein WDR59 OS=Homo sapiens GN=WDR... [more]
back to top