TCONS_00016563-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016563-protein
Unique Name	TCONS_00016563-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	606

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016563-protein ID=TCONS_00016563-protein|Name=TCONS_00016563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MTRNHETCSKSRRNVSKKYRKLTSSDDETEKCRRHTRSSSKPRKCGCCLS
DNEETEEKTNFRKRMISILSPAVSHKNLATILSTDNSELFQSKPKPGCDE
SRKSRKKCSKHAVVPSNERSKSNSRVRVKHNENCRKKIRHQCTEKPPKRP
VNLPKCPGCSKEFDSPILLSCGHTLCRHCVAMFVEASNGSFFKCPVCETE
IRLSGDEEELFCPNFMTLRQIEHGGDNSTDDLLCAVCQSDIEADYYCDTC
QDLLCCNCANAHQVVKYTKGHRVRDIDCSTDVSSLIKKRYYCVDHEKELL
NTFCVPCQKCICKKCASLFHRGTNHQCIPTANAAQKAKDEMRRQLYEFKS
RSPNLQLALMDLQHSKKTLKEQANVTYAEISESMGRIISAIKEHEKKLHK
RLEDVCQTKVSALKSQKHQIVNQLERFETLTNILQDLDQHDNNVETLQMR
ATIRTCAEVLEKDPLKLKCSQSSIFFNSNELKVKSEVEKHGEIFHITSND
GRRKSISDLSNERNDYIISNFAGRVAFPVTINAETDLDLRKNAKKIRAKS
NWKILRSRLPEVINSSRPPRAPIQGETSRRRNTRKKQISRARREKARANW
MILRSH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009257	XLOC_009257	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016563	TCONS_00016563	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 430..450
None	No IPR available	PFAM	PF15227	zf-C3HC4_4	coord: 156..197 e-value: 1.0E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 563..596
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	SUPERFAMILY	57845	B-box zinc-binding domain	coord: 287..346
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 153..203
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 229..276 e-value: 1.4E-8 score: 44.5 coord: 287..330 e-value: 0.13 score: 16.4
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 291..329 e-value: 2.4E-5 score: 24.3
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 229..276 score: 10.224
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 287..330 score: 11.135
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 156..197 e-value: 1.1E-4 score: 31.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 156..198 score: 11.707
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 155..201 e-value: 1.74255E-4 score: 38.5808
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 124..278 e-value: 1.1E-11 score: 44.2 coord: 279..340 e-value: 0.17 score: 11.2
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 171..180

Blast

[Close]

BLAST of TCONS_00016563-protein vs. Swiss-Prot (Human)
Match: TRI45 (Tripartite motif-containing protein 45 OS=Homo sapiens GN=TRIM45 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.249e-19
Identity = 90/324 (27.78%), Postives = 133/324 (41.05%), Query Frame = 0

Query:  156 CPGCSKEFDSPILLSCGHTLCRHCVAMFVE-------------ASNGSFFK--------------CPVCETEIRLS-GDEEEL----FCPNFMTLRQIEHGGDNSTDDLLCAVCQSDIEADYYCDTCQDLLCCNCANAHQVVKYTKGHRVRDIDCSTDVSSLIKKRYYCVDHEKELLNTFCVPCQKCICKKCASLFHRGTNHQCIPTANAAQKAKDEMRRQLYEFKSRSPNLQLALMDLQHSKKTLKEQANVTYAEISESMGRIISAIKEHEKKLHKRLEDVCQTKVSALKSQKHQIVNQLERFETLTNILQDLDQHDNNVETL 447
            CP C   F +P LL C HT+C  C+                  +S GS F+              CPVC+ ++ L  G  + L       N + L  +   G      L+C +C +D E +  C TC+  LC  C  AH+  K T  H + D+       S I K   C  H  E L  FC  C + +C+ C    HR   H C  T+N   K  D +   L   +     L+ AL  +      L+++     A++       I AI+EH  KL K+LED+   K ++L+ QK Q+   L    T     + L    +++E L
Sbjct:   29 CPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFSVVDIRGGDSDTSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVNDVMLESLRGEGQG----LVCDLC-NDREVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLK-DLKGYSRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHR--EHPCDFTSNVIHKHGDSVWELLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTFSEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEIL 344

The following BLAST results are available for this feature:

BLAST of TCONS_00016563-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRI45	1.249e-19	27.78	Tripartite motif-containing protein 45 OS=Homo sap...	[more]

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TCONS_00016563-protein (polypeptide) - C. hemisphaerica