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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00016481-protein ID=TCONS_00016481-protein|Name=TCONS_00016481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1588bp
MSPPLGKRTPQQPLPEGRPKRQAVLNRKSNVDIAKGSAPKSPLKKVIQKD
SEVAGKTNTNKESPLKKIAKISEAIRKSPRIKVKEKESEEDESSTTSPTK
KEKTTKSSATKSRKRKKSESAEIEEIEEESQEEEEEAIEGAKEEVEDEGE
DEGEGSSDEESVPDDGALDDEEDSDFDPNDDPDKLWCFCKKPHGNRFMIC
CDSCEDWFHGDCVAISMAKGREMEKTGEEWCCRRCKEKAAKEATQTEQSE
QAETKLDATRKPLDQATLSKARTLSIDSIKTNLEKKIKDRALTLSVPDQS
TNQPLEKAEEKLEKKKRKESASGGNSFSGLLTFDHVPSSVKKGEHRSPQK
RFHIPDEKKIKLKSKVRTTPQPAKIVEPVKQCLREECTNPVMKGSVYCCR
ECIYKYSNECIKQFEQDRKKKNPTEPTTPRAKGSTIISPAQSSTDVFTET
SQERIAVFEKSSGKVVAGVMAPTKKYLFAWLEEHPTYEVLKSGLQKDIKT
PKKNQDENVRLNVRKTLKDVLTSRCQDSNTAINVEAIGFICKKVEQELLK
SFGETNQKYRTKYRSLLFNLKDTNNEVLYKRVVSGEITPHKLVNMSPEQL
ATPELAAWRQNESKHNIEMIKKREADNAEVRNKFSGTKKTHKGEVEIDGE
SSSFETLKTKLEERPARERKISITEENSGKDLTSLLKDTTDEHTKHLFDS
NCKICTGKIAPPGETQLSTISTTSSIIQAAPESSMPSPQIEDDLSILSSP
PSPEDRSISLTPTSPGPSKVPPSARKQPSVWRGFVAMNKVARFVCTAYAV
SGSCDKLMEILPDTINVCGRIPPNQVWEYLGQMKEGRKNHKYIDVIRFEM
SSDEEKTGYIKLYSYFYSRNRVGVVGNCYSGVKDMYILPLASHDPIPEEL
KPLPGLPKPRPHMLVGIIVRLKSKLKEDPTPLSSPENPVPKKKKKKKKEK
EQLEKEKIEIEAQKKLIDIIFKNRASGLATPSTETSSNTPEGVLLDIDPV
KLLGELKSSAPTTVLAKAVEEEQTPEKDKNDKKDVVEEGGEVVAMEIEEE
QMALMKKQQDEIDQLKAQLNDEVVQIPDPQQMAQSLSTTISNEMETSAEE
EALQSETEPNEEVMDIKHAEKDGQPSPSKAIVRQEGEEVQKEQQIIEVTE
HKAEKTQLSFDVSEIPLLGVKDDEMADVPTSKETEKPSYSKTPSIESILA
RDKSDQSQPSDDDYVLNLIETIEIPTQNKKPKLPLDSLKEPKVEKPALPA
IQLPSTERASRRMSSTASDLASFLTEVPPKVPLPPNIKLPPGVPFPPLPP
PIPPEHQRNMDRPKDKWERGPERTHNHPREQYNPSDERFPLRKEQHPVLE
ERENLRHGECNERVSDPRANQARSNRIPRQLREDSHFPNNPPTSKPFRNE
RFPIQNQRAHQEPPPNLQPHRAPDFQQRSNEREHFQPNPQHQTEQPPRQH
NQPFTPRPNNQAMGRPPFNEHFEQNRPPANRMQTQQNFNHRQPPPNIRPP
FFRGFPDQGPRFPGPPPPMPRGPAPSTTGNRFGQPADNFFHNNNELPFDG
NRNDNYGHPGNPHFRPQQQHRPRFHGNNNKRRRGQNYR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0016817 | hydrolase activity, acting on acid anhydrides |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006351 |
transcription, DNA-templated |
| molecular_function |
GO:0016817 |
hydrolase activity, acting on acid anhydrides |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 109..151 |
| None | No IPR available | COILS | Coil | Coil | coord: 1048..1075 |
| None | No IPR available | COILS | Coil | Coil | coord: 939..966 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1119..1138 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 727..776 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 926..953 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1092..1111 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 417..443 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 294..360 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..179 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1509..1588 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1169..1476 |
| None | No IPR available | CDD | cd15552 | PHD_PHF3_like | coord: 186..235
e-value: 1.78049E-27
score: 107.1 |
| None | No IPR available | SUPERFAMILY | 160481 | BRK domain-like | coord: 444..494 |
| IPR003618 | Transcription elongation factor S-II, central domain | SMART | SM00510 | mid_6 | coord: 511..611
e-value: 4.5E-25
score: 99.3 |
| IPR003618 | Transcription elongation factor S-II, central domain | PFAM | PF07500 | TFIIS_M | coord: 508..619
e-value: 1.6E-29
score: 102.6 |
| IPR003618 | Transcription elongation factor S-II, central domain | GENE3D | 1.10.472.30 | | coord: 490..604
e-value: 2.4E-27
score: 94.9 |
| IPR003618 | Transcription elongation factor S-II, central domain | PROSITE | PS51321 | TFIIS_CENTRAL | coord: 509..628
score: 31.866 |
| IPR003618 | Transcription elongation factor S-II, central domain | SUPERFAMILY | 46942 | Elongation factor TFIIS domain 2 | coord: 500..604 |
| IPR006576 | BRK domain | SMART | SM00592 | 122neu5 | coord: 450..494
e-value: 3.5E-12
score: 56.5 |
| IPR006576 | BRK domain | PFAM | PF07533 | BRK | coord: 450..490
e-value: 3.1E-13
score: 49.0 |
| IPR001965 | Zinc finger, PHD-type | SMART | SM00249 | PHD_3 | coord: 186..236
e-value: 3.0E-9
score: 46.7 |
| IPR019787 | Zinc finger, PHD-finger | PFAM | PF00628 | PHD | coord: 187..238
e-value: 2.3E-9
score: 36.9 |
| IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 184..238
score: 9.419 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 175..252
e-value: 2.5E-13
score: 49.0 |
| IPR012921 | Spen paralogue and orthologue SPOC, C-terminal | PFAM | PF07744 | SPOC | coord: 774..920
e-value: 4.4E-24
score: 85.0 |
| IPR019786 | Zinc finger, PHD-type, conserved site | PROSITE | PS01359 | ZF_PHD_1 | coord: 187..235 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 173..239 |
Blast
BLAST of TCONS_00016481-protein vs. Swiss-Prot (Human)
Match: PHF3 (PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3) HSP 1 Score: 305.449 bits (781), Expect = 7.355e-84 Identity = 188/468 (40.17%), Postives = 265/468 (56.62%), Query Frame = 0
Query: 507 ENVRLNVRKTLKDVLTSRCQDSNTAINVEAIGFICKKVEQELLKSFGETNQKYRTKYRSLLFNLKDTNNEVLYKRVVSGEITPHKLVNMSPEQLATPELAAWRQNESKHNIEMIKK--READNAEVRNKFSGTKKTHKGEVEIDGESSSFETLKTKLEERPARERKISITE--ENSGKDLTSLLKDTTDEHTKHLFDSNCKICTGKIAPPGETQLSTISTTSSIIQAAPESSMPSPQIEDDLS----ILSSPPSPEDRSISLTPT-SPGPSKVPPSARKQPS--------VWRGFVAMNKVARFVCTAYAVSGSCDKLMEILPDTINVCGRIPPNQVWEYLGQMKEGRKNHKYIDVIRFEMSSDEEKTGYIKLYSYFYSRNRVGVVGNCYSGVKDMYILPLASHDPIPEELKPL--PGLPKPRPHMLVGIIVRLKSKLKEDP---------TPLSSPENPVPKKKKKK 946
+ +R +VR +LKD+L R DSN + E + K+E+EL F +T+ KY+ KYRSL+FNLKD N +L+K+V+ GE+TP L+ MSPE+LA+ ELAAWR+ E++H IEMI+K RE + + TK THKGE+EI+ ++ E + PA + + E E +++ S+ KDTT +H +HLFD NCKIC G++APP + LS + A S + I D LS IL+S E++ S T SP P P + S +W+GF+ M VA+FV AY VSGS + L E LPD+I V GRI P VW+Y+ ++K K I V+RF ++E++ Y L++YF SR R GV N VKDMY++PL + D IP L P PGL RP++L+G+I+R K K + TP S+P +P KK K
Sbjct: 925 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPI------TKITHKGEIEIESDAPMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEVDSMSKDTTSQHRQHLFDLNCKICIGRMAPPVD-DLSPKKVKVVVGVARKHSDNEAESIADALSSTSNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKAS--GTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGATDKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSACASTSHIAETPESAPPIALPPDKKSK 1383 HSP 2 Score: 87.0409 bits (214), Expect = 6.681e-17 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query: 162 VPDDGALDDEEDSDFDPNDDPDKLW-----C-FCKKPHGNRFMICCDSCEDWFHGDCVAISMAKGREMEKTGEEWCCRRCKEKAAKEATQTE 247
+PD+ A E SD + + +W C FCKKPHGNRFM+ C C+DWFHGDCV +S+++ ++M + +E+ C +C A+E +TE
Sbjct: 690 IPDNIATIRREGSDHSSSFESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKC---CAEEDKKTE 778
The following BLAST results are available for this feature:
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