TCONS_00016418-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016418-protein
Unique Name	TCONS_00016418-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	680

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016418-protein ID=TCONS_00016418-protein|Name=TCONS_00016418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp
MSTQKKTSSFDRDGIRKIKTSSSMDDILDELTKPRSASLNNIEHFHNKSA
RTSPKVERYNSHGSHHHHGFHLSASPLKGLKKKLNAFKLSRSNCDLSSQA
SQQETIEKSPNYDPNKLLPYATPNTLNTNVDSGNRSPRDVRKNWQRDEMR
KKKNSENNNSFVNTQQQQQPNHHHSESNGSVTNSHAHSQSFDRHSSNSDT
LSLSSVKDRHRSSQDSTDQYIVVEALHDDSQDSPSETDECDGFQPTYSEE
YTHQEIDRLLKKIDKTKDELVQMQATKDEYVKEYLKSADVDDSSETAIKN
KMNFEKNNQKTNASIQLLQKKLEKYQEKLKVLEERGIHGPKRIIRAVQDS
VRSGASSITGAVSKPLGSLNNFMKKDKRNTSSDNVSLHTSQTEDGMERMT
NSMNNISDEDSSSCSNNILGSSHHSDIDCGGMNENHPLHGIHFTERINSQ
NEQIEDLVKENEEMREGFTKMKDDMERMLQSFQEERYKNEQLSNEVSDMY
HQWHDLTELHQNEMSGLKQEMDQTLERIECMEYRFSERSGDIEEAIGGCE
TRITKMELQQQHQQQLLLSVDGYFDAGGNTKALLTKLLSLVLNMFTILLL
LLSTLSKILMPFTSTRTRIITTSITILCLIIFCRNTENGLMTLYDIARQI
FLPLYNRIPYRTASSEMSNSESSEMGTESR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009170	XLOC_009170	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016418	TCONS_00016418	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019394	TEX28/TMCC

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 301..335
None	No IPR available	COILS	Coil	Coil	coord: 447..495
None	No IPR available	COILS	Coil	Coil	coord: 256..283
None	No IPR available	COILS	Coil	Coil	coord: 507..534
None	No IPR available	GENE3D	1.20.1170.10		coord: 341..589 e-value: 4.6E-8 score: 31.8
None	No IPR available	GENE3D	1.20.5.340		coord: 249..336 e-value: 0.0028 score: 17.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..76
IPR019394	Testis-specific protein TEX28/transmembrane and coiled-coil domains protein	PFAM	PF10267	Tmemb_cc2	coord: 254..636 e-value: 2.8E-65 score: 220.9

Blast

[Close]

BLAST of TCONS_00016418-protein vs. Swiss-Prot (Human)
Match: TMCC1 (Transmembrane and coiled-coil domains protein 1 OS=Homo sapiens GN=TMCC1 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.299e-41
Identity = 152/453 (33.55%), Postives = 224/453 (49.45%), Query Frame = 0

Query:  230 SQDSPSETDECDGFQPTYSEEYTHQEIDRLLKKIDKTKDELVQMQATKDEYVKEYLKSADVDDSSETAIKNKMNFEKNNQKTNASIQLLQKKLEKYQEKLKVLEERGI-HGPKRIIR------------------AVQDSVRSGASSITGA--------VSKP--LGSL--NNFMKKDKRNTSSDNVSLHTSQTEDG------MERMTNSMNNISDEDSSSCSNNILGS-SHHSDIDCGGMNENHPLHGIHFTERINSQNEQIEDLVKENEEMRE-------GFTKMKDDMER----MLQSFQEERYKNEQLSNEVSDMYHQWHDLTELHQNEMSGLKQEMDQTLERIECMEYRFSERSGDIEEAIGGCETRITKMELQQQHQQQLLLSVDGYFDAGGNTKALLTKLLSLVLNMFTILLLLLSTLSKILMPFTSTRTRIITTSITILCLIIFC 633
            S D    TD  DG   T   + T   I  L +KI K  +++   Q  +D+ V EYLK A+  D  + A + K  FEK NQK+  +I  LQKKLE Y  KL+ +E+ GI   PK + R                   V DSV+ G SS + A        VSKP  + SL  N F   D  N  +   SL   Q +D       +    +S    S+ED SS ++  +G+ S    I  G  +          T  ++ Q+   + L+ E +E+RE        F  +K+  +R    ++Q+ QEERY+ E+L         Q +DLTELHQNE+  LKQE+    E+I    Y   ER+ DI+EA+  C+TRI+KMELQQQ QQ + L  +G  +A    + LL KL++++L +  +LL+ +ST++  ++P   TR R  +T    L L++F 
Sbjct:  211 STDGSIHTDSVDG---TPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAA-RIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKFGSAD--NIPNLKDSLEEGQVDDAGKALGVISNFQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSK--------TNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRDYSLIMQTLQEERYRCERLE-------EQLNDLTELHQNEILNLKQELASMEEKIAYQSY---ERARDIQEALEACQTRISKMELQQQQQQVVQL--EGLENA--TARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFST----LFLVVFI 631

The following BLAST results are available for this feature:

BLAST of TCONS_00016418-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMCC1	1.299e-41	33.55	Transmembrane and coiled-coil domains protein 1 OS...	[more]

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TCONS_00016418-protein (polypeptide) - C. hemisphaerica