TCONS_00016397-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016397-protein
Unique NameTCONS_00016397-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016397-protein ID=TCONS_00016397-protein|Name=TCONS_00016397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1092bp
MADIRSFFAPKGTKKKTVNGGSTSSSGKSSKSKSDDKPVVKEKKRRIVIE
SDSDSEDPIPGKLKNEKEEPKKQKPSADSSKNVDKGKKEKTSLKPTTATD
FFGSSNSTSSSTKRKQPESPIPQQKENKPKESKETKEISETPPKKKKKTA
EEELTKIKTKELTQTEPKTVETLPPKKKNDPDEILMPDDDDDFIIAPTPE
AKKSSSKKLGDKMKDAKSSNKMEDKANNNVEDKMKEGLKEYIEKSKQKQK
NDMKKEPVEHEEQTPNKKKPIKLVEDTPDSSVKPETPNTDKKKNYWSYKN
REGPSALGSKELPKASENCLAGKTFVLTGVLDAFERDTIEDHIKRYGGRV
TGGVSGKTTYVIVGKEPGQSKMDKAAKHKTKQLDEDGFIELLKSFPPPDE
DPEEMEVSIQEDTPQAATPNIKGSAHKSSPSVHTPTPSNQTQSQKSTPGT
SSQRPFPSFGQSPSSFTPKSLSLGSQNTNSPRSQSSTYSQSPSLSKKNEG
DGDCLLWVDKYKPKEMREIVGQHGDKSNAKKLRKWLMDWRDNHAPKPPGA
KDAKPKKNFMAGKEDGSIFRAALLSGSPGLGKTTTATIVCKELGFSYVEM
NASDTRGKKALETVIKESLSNVAVTGMLQGENNGGKKHCLLMDEVDGMAG
NEDRGGMNELIQLIKKSKIPIICMCNDRNSQKVRSLANYCFDLRFYKPRV
DQIKSFALKVACREGLKIPPQAIEQIIIGANQDIRQVLHNMQMWTATKNT
LSYDEAKDNAKQAAKNIKLGPFDIVKNLFTHSDASKMTLNGKTDLFFNDY
SFVPLFVQQNYLNVKPNAARDLNSHLDLISKTADAIADGNLVERSIRSDQ
SWSLLPLQGLFSTVLPSNYMSGGLTGRIDFPQWLGKNSSRNKHDRILQEL
KTHLALSANCMKSDINLDYLSTFKHRLGQPLTNSNTDANSAAKEVIEMME
SYNLTREDWDSVMEIGKWGNEPDITSKIPTKVKSAFTRLYNKETHKNPYA
STQPAKKAKSTTAASDGDVLIQDGDKDETQNEASDNEKEDDDISKDGMVK
MKKETTASKSKTQKKTGGGASSSKTKAKGGASSSKGKGKAKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009159XLOC_009159Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016397TCONS_00016397Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR013725DNA_replication_fac_RFC1_C
IPR012178RFC1
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003689DNA clamp loader activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005663DNA replication factor C complex
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005663 DNA replication factor C complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003689 DNA clamp loader activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 317..395
e-value: 5.0E-12
score: 56.0
IPR001357BRCT domainGENE3D3.40.50.10190coord: 288..395
e-value: 1.8E-20
score: 72.7
IPR001357BRCT domainPFAMPF00533BRCTcoord: 317..391
e-value: 1.5E-14
score: 54.0
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 315..393
score: 13.173
IPR001357BRCT domainCDDcd00027BRCTcoord: 322..393
e-value: 4.61335E-14
score: 68.117
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 315..394
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 568..701
e-value: 1.7E-6
score: 37.6
NoneNo IPR availableGENE3D3.40.50.300coord: 504..697
e-value: 1.2E-23
score: 83.0
NoneNo IPR availableGENE3D1.10.8.60coord: 698..769
e-value: 7.4E-11
score: 41.3
NoneNo IPR availableGENE3D1.20.272.10coord: 771..880
e-value: 5.2E-37
score: 125.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 540..559
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..502
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 994..1092
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..311
NoneNo IPR availableCDDcd00009AAAcoord: 573..698
e-value: 2.35255E-14
score: 71.0231
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 573..698
e-value: 8.5E-16
score: 58.5
IPR013725DNA replication factor RFC1, C-terminalPFAMPF08519RFC1coord: 836..992
e-value: 3.2E-56
score: 189.8
IPR012178Replication factor C subunit 1PIRSFPIRSF036578RFC1coord: 2..1080
e-value: 9.1E-267
score: 885.5
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 769..905
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 505..759

Blast
[Close]
BLAST of TCONS_00016397-protein vs. Swiss-Prot (Human)
Match: RFC1 (Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4)

HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 364/786 (46.31%), Postives = 520/786 (66.16%), Query Frame = 0 
Query:  281 SVKPETPNTDKKKN----YWSYKNREGPSALGSKELPKASENCLAGKTFVLTGVLDAFERDTIEDHIKRYGGRVTGGVSGKTTYVIVGKEPGQSKMDKAAKHKTKQLDEDGFIELLKSFPPPDEDPE-EMEVSIQEDTPQAATP--NIKGSAHKSSPSVHTPTPSNQTQSQKSTPGTSSQRPFPSFGQSPSSFTPKSLSLGSQNTNSPRSQSSTYSQSPSLSK-KNEGDGDCLLWVDKYKPKEMREIVGQHGDKSNAKKLRKWLMDWRDNHAPKPPGAKDAKPKKNF--MAGKEDGSIFRAALLSGSPGLGKTTTATIVCKELGFSYVEMNASDTRGKKALETVIKESLSNVAVTGMLQGENNGGK-----KHCLLMDEVDGMAGNEDRGGMNELIQLIKKSKIPIICMCNDRNSQKVRSLANYCFDLRFYKPRVDQIKSFALKVACREGLKIPPQAIEQIIIGANQDIRQVLHNMQMWTATKNTLSYDEAKDNAKQAAKNIKLGPFDIVKNLFTHS-DASKMTLNGKTDLFFNDYSFVPLFVQQNYLNVKPNAA-RDLNSHLDLISKTADAIADGNLVERSIRSDQSWSLLPLQGLFSTVLPSNYMSGGLTGRIDFPQWLGKNSSRNKHDRILQELKTHLALSANCMKSDINLDYLSTFKHRLGQPLTNSNTDANSAAKEVIEMMESYNLTREDWDSVMEIGKWGNEPDITSKIPTKVKSAFTRLYNKETHKNPYASTQPAKKAKSTTAASDGDVLIQDGDKDETQNEASDNEKEDDDISKDGMV 1049
            SV PE  +++KK+     Y SY NREGP ALGSKE+PK +ENCL G  FV+TGVL++ ERD  +  I+RYGG+VTG VS KT Y+++G++ GQSK DKAA   TK +DEDG + L+++ P      E  +E  +++++    TP  N++G    S     + +  ++  S++ +   + ++    F         KSL    Q       ++S  S++ +L+   +E   + LLWVDKYKP  ++ I+GQ GD+S A KL +WL +W+ +       ++D K    F   +GK+DGS F+AALLSG PG+GKTTTA++VC+ELG+SYVE+NASDTR K +L+ ++ ESL+N ++ G     +NG       KH L+MDEVDGMAGNEDRGG+ ELI LIK +KIPIICMCNDRN  K+RSL +YCFDLRF +PRV+QIK   + +A +EGLKIPP A+ +II+GANQDIRQVLHN+ MW A    L+YD+AK ++ +A K+IK+GPFD+ + +F    + + M+L  K+DLFF+DYS  PLFVQ+NY++VKP AA  D+  HL L+S+ AD+I DG+LV+  IRS Q+WSLLP Q ++++VLP   M G +T    FP WLGK+SS  KHDRI+Q+L  H++L     K  +N+DYLS  +  L QPLT+   D     ++V+ +M++Y L +ED++++MEI  WG +P   SK+  KVK+AFTR YNKE H  PY S Q  K ++ +T+ S      ++ ++D++Q+    +EK+ D I  D M+
Sbjct:  366 SVSPE--DSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFW--------KSLDFKEQVAE----ETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKS------SSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFY---SNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVD---GVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPY-SLQAIKASRHSTSPSLDSEYNEELNEDDSQS----DEKDQDAIETDAMI 1120
The following BLAST results are available for this feature:
BLAST of TCONS_00016397-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC10.000e+046.31Replication factor C subunit 1 OS=Homo sapiens GN=... [more]
back to top