TCONS_00016348-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016348-protein
Unique NameTCONS_00016348-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016348-protein ID=TCONS_00016348-protein|Name=TCONS_00016348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MAEGQDPKADRGYDFDLVKKEQGADFECTICHLILRDPYSTPCNHAFCYV
CLTQWHTEQGNAKRPITCPNCNTVYNPEKIHREGVIDRMVKTSLDVKCKK
HEMGCKWQGKIIDYQEHHQMRCQYETVPCENKGCLKNLLRKNLPNHQRDC
EYRLTQCGYCQLTKPVIEMKNHRHECPMMKVVCSNDECNVQVLRKDVGQH
LLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009130XLOC_009130Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016348TCONS_00016348Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 28..71
e-value: 1.6E-5
score: 34.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 28..72
score: 12.268
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 27..74
e-value: 2.46494E-4
score: 35.8844
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 28..71
e-value: 6.4E-7
score: 29.1
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 118..172
e-value: 1.8E-9
score: 38.0
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 117..160
score: 11.023
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 172..201
score: 8.803
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..89
e-value: 1.5E-16
score: 59.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 90..135
e-value: 4.2E-13
score: 48.8
coord: 136..156
e-value: 1.9E-5
score: 24.3
coord: 157..201
e-value: 1.6E-6
score: 27.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 43..52
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 157..202
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 93..169
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 20..78

Blast
[Close]
BLAST of TCONS_00016348-protein vs. Swiss-Prot (Human)
Match: PZRN3 (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.298e-19
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 0 
Query:   12 GYDFDLVKKEQGADFECTICHLILRDPYSTPCNHAFCYVCLTQWHTEQGNAKRPITCP-NCNTVYNPEKIHREGVIDRMVKTSLDVKCKKHEMGCKWQGKIIDYQE--HHQMRCQYETVPCENKGCLKNLLRKNLPNHQRD-CEYRLTQCGYCQ 161
            G++ D    +   D +C +CH +L DP +TPC H FC  C+  W  ++G      +CP  C    + ++++    + R++   LD+KC     GC   G+++  Q+   H  RC +    C + GC + LLR+++  H RD C+ R    G CQ
Sbjct:    2 GFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEG------SCPARCRGRLSAKELNHVLPLKRLI-LKLDIKCAYATRGC---GRVVKLQQLPEHLERCDFAPARCRHAGCGQVLLRRDVEAHMRDACDAR--PVGRCQ 143
The following BLAST results are available for this feature:
BLAST of TCONS_00016348-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PZRN38.298e-1930.52E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens... [more]
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