TCONS_00016347-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016347-protein
Unique NameTCONS_00016347-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016347-protein ID=TCONS_00016347-protein|Name=TCONS_00016347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MAAARWSSINQKSEALQDQVFKLIGPRCVALSTAVAELHLLMRTQYGVDY
WKKEHSGVVCFVKDNPRRSFFIMVIDLEQKAIVWEYELFFRGLEFNTTST
APNFYIIVQNEGQTRFGFNFSDIAEAQNFVGVIKKKIEERKQKRILVRTY
TNTMQQLRASRAPSLSLPSPTGQFYSSIGDAGPLDHKNIVQDSRWQMLFQ
HAGVTENQLNDEETLKFIFDFVNSHGGITKATSEFKQVGSSSFLSNEKER
NSNAAGSSSKQNEIPSEKAPRKNSGDWRVKQLDSWTVEDVCDWLKDISLE
EYCELFRFHAIDGVELMEQNESLVDALKIERIGHRRKIIRNLSQLLDKEN
EDGKNGQEKAKNNERSKTESGPPDELLCPITQELMTDPVIVADGYTYERT
SITQWFETGNHRSPMTNLPLKNKDLVPNRSLKDAINRHLGD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009129XLOC_009129Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016347TCONS_00016347Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR000697WH1/EVH1_dom
IPR003613Ubox_domain
IPR000095CRIB_dom
IPR011993PH_dom-like
IPR013083Znf_RING/FYVE/PHD
IPR011026WASP_C
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0007015actin filament organization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007015 actin filament organization
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 282..348
e-value: 4.2E-18
score: 76.1
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 283..344
e-value: 2.9E-15
score: 56.0
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 285..348
score: 15.451
IPR000697WH1/EVH1 domainSMARTSM00461WH1_2coord: 24..136
e-value: 2.8E-6
score: 36.9
IPR000697WH1/EVH1 domainPFAMPF00568WH1coord: 22..136
e-value: 3.7E-17
score: 62.2
IPR000697WH1/EVH1 domainPROSITEPS50229WH1coord: 23..140
score: 18.784
IPR003613U box domainSMARTSM00504Ubox_2coord: 375..438
e-value: 1.9E-24
score: 97.2
IPR003613U box domainPFAMPF04564U-boxcoord: 373..439
e-value: 2.5E-21
score: 75.5
IPR003613U box domainPROSITEPS51698U_BOXcoord: 371..441
score: 37.18
IPR000095CRIB domainGENE3D3.90.810.10coord: 136..240
e-value: 0.0017
score: 18.1
IPR011993PH domain-likeGENE3D2.30.29.30coord: 39..135
e-value: 2.9E-7
score: 30.1
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 20..140
NoneNo IPR availableGENE3D1.10.150.50coord: 270..360
e-value: 2.0E-18
score: 65.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..374
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..275
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 363..439
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 372..440
e-value: 3.0E-12
score: 45.7
IPR011026Wiscott-Aldrich syndrome protein, C-terminalSUPERFAMILY47912Wiscott-Aldrich syndrome protein, WASP, C-terminal domaincoord: 190..247
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 276..348

Blast
[Close]
BLAST of TCONS_00016347-protein vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.527e-30
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 0 
Query:  278 RVKQL-DSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELME-QNESLVDALKIERIGHRRKIIRNLSQLLDKENEDGKNGQEKAKNNERSKTESGPPDELLCPITQELMTDPVIVADGYTYERTSITQWFETGNHRSPMTNLPLKNKDLVPNRSLKDAINRHL 439
            ++KQ  + W+ EDV  WL    L++   +F+ + IDG EL+    ESL D LKIE +G R K++R + +L           + K K+       SG PDE +CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  324 QLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEEL-----------RTKVKS-----LSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00016347-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU12.527e-3042.68WD repeat, SAM and U-box domain-containing protein... [more]
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