TCONS_00016340-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016340-protein
Unique Name	TCONS_00016340-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	541

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016340-protein ID=TCONS_00016340-protein|Name=TCONS_00016340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MLEDENEDGIFVKIFKLVVDEDCNMRRITFPVLIKCSIGLSLLFVLGQFS
LLLFCSCKCNHMEKRTDYTVKRIGRSESAGTNTECKEQIGRLNEKIVELE
KLVKKYQQLDQFIITDEMTENKKSLNELTFLKSYSPRSEHEVIPFSAFDS
RHVFGEIGFLSKRPRASPIGQQASELREVLNFALQDLNRDVESNNDRVTI
DGFVEGITRNDFLHGTVYDLFFRSANSNNIFKRLKVLRPFQGIRKIGKPE
TIDTSNEIINIIIPLSGRIDKFIAFMDRLVEVGIRQDRRIFITVVYFGME
GREEVKKYFLKMSKEETFEDYKVIFTKEEFNRGRGLQKGAKSWKKGNVLM
FFCDIDIYFDSSFLERCRLHTSPGSKIYYPVVFSQYNPSIIYGGRDPPSL
KEQMNILPESGFWRDFGFGMTCQYRDDFFNVGGFDLTIKGWGGEDIALYK
QHLRNNALTMVRAYDPGLIHIYHGKNCRKTLSDAQFISCLQSKAIAEGSH
KQLGMLAFGNTLINGNDPDWSNRLKASLNEIVTEEKVEAKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009122	XLOC_009122	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016340	TCONS_00016340	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008428	Chond_GalNAc
IPR029044	Nucleotide-diphossugar_trans

Vocabulary: **Molecular Function**
Term	Definition
GO:0008376	acetylgalactosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0032580	Golgi cisterna membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032580	Golgi cisterna membrane
molecular_function	GO:0008376	acetylgalactosaminyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..109
IPR008428	Chondroitin N-acetylgalactosaminyltransferase	PFAM	PF05679	CHGN	coord: 88..503 e-value: 8.1E-81 score: 272.3
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 225..506 e-value: 3.7E-20 score: 71.9
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 257..297 coord: 325..496

Blast

[Close]

BLAST of TCONS_00016340-protein vs. Swiss-Prot (Human)
Match: CGAT1 (Chondroitin sulfate N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=CSGALNACT1 PE=1 SV=2)

HSP 1 Score: 357.066 bits (915), Expect = 2.346e-117
Identity = 195/443 (44.02%), Postives = 269/443 (60.72%), Query Frame = 0

Query:   83 TECKEQIGRLNEKIVELEKLVK--KYQQLDQFII-TDEMTENKKSLNELTFLKSYSPRSE----------HEVIPFSAFDSRHVFGEIGFLSKRPRASPIGQ-QASELREVLNFALQDLNRDVES--NNDRVTIDGFVEGITRNDFLHGTVYDLFFRSANSNNIFKRLKVLRPFQGIRKIGKPETIDTSNEIINIIIPLSGRIDKFIAFMDRLVEVGIRQDRRIFITVVYFGMEGREEVKKYFLKMSKEETFEDYKVIFTKEEFNRGRGLQKGAKSWKKGNVLMFFCDIDIYFDSSFLERCRLHTSPGSKIYYPVVFSQYNPSIIYGGRDP-PSLKEQMNILPESGFWRDFGFGMTCQYRDDFFNVGGFDLTIKGWGGEDIALYKQHLRNNALTMVRAYDPGLIHIYHGKNCRKTLSDAQFISCLQSKAIAEGSHKQLGMLAF 508
            +  K QI +L E++ E  + ++  +YQ  D   +  D     K   + L FL S   ++E          +  +PF +F  + V+     L++ P   P+ + +  EL E +  AL+ LN   E+  N+   T   F+EGI R +   GT+Y+L F+  + +  FKRL + RPF  I K+ K E ++ +N +IN+I+PL+ R+DKF  FM    E+ I QD R+ +TVVYFG E   EVK      SK   F ++  I    EF+RG+GL  GA+ WK  NVL+FFCD+DIYF S FL  CRL+T PG K++YPV+FSQYNP IIYG  D  P L++Q+ I  E+GFWRDFGFGMTCQYR DF N+GGFDL IKGWGGED+ LY+++L +N L +VR    GL H++H K C   L+  Q+  C+QSKA+ E SH QLGML F
Sbjct:   73 SSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADLLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHE-FKRLILFRPFGPIMKV-KNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSN-LIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVF 512

The following BLAST results are available for this feature:

BLAST of TCONS_00016340-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016340-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CGAT1	2.346e-117	44.02	Chondroitin sulfate N-acetylgalactosaminyltransfer...	[more]

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TCONS_00016340-protein (polypeptide) - C. hemisphaerica