NK2a homeodomain transcription factor protein (polypeptide) - C. hemisphaerica

Overview
NameNK2a homeodomain transcription factor protein
Unique NameTCONS_00016211-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016211-protein ID=TCONS_00016211-protein|Name=NK2a homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MDQSRSSFDNMAPAVTTSFLVDSILNQRQQSVDVFENRLSSPPMDPHYSG
PPPPHGYLGYQPCAPPYLYGGERRIPKWERHDPDDASNNGGTSPISPRSR
LPGDYMASRRAEELMAFGNMKNEPGRLEVDPGLSCMVAEAERKAGHNHYD
TNSDPSINTTILPTVQPKTEYDPTSHDMHATNEQLVQQMHHQTTTKPIRK
KPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNK
RYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQPPSCPPHCYRPSP
PSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWPCYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009058XLOC_009058Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016211TCONS_00016211Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 246..255
score: 69.93
coord: 221..232
score: 33.97
coord: 236..246
score: 63.91
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 199..261
e-value: 1.2E-25
score: 101.2
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 200..256
e-value: 1.7E-20
score: 72.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 197..257
score: 19.791
NoneNo IPR availableGENE3D1.10.10.60coord: 191..266
e-value: 2.4E-22
score: 77.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..103
NoneNo IPR availableCDDcd00086homeodomaincoord: 200..258
e-value: 2.2138E-23
score: 90.3804
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 232..255
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 183..258

Blast
[Close]
BLAST of NK2a homeodomain transcription factor protein vs. Swiss-Prot (Human)
Match: NKX26 (Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.521e-26
Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = 0 
Query:  199 RKKPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNKRYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQ--PPSCPPHCYRPSPPSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWP 341
            R+KPR+LFSQ+QV+ LE++FK+Q+YLSA ER+ +AS L LT TQVKIWFQN+RYKCK+Q Q+    +   P     L   +  VPVLV+   P   P    P+ PS    +  P   Y GY    Y A +     Y+ +P    P
Sbjct:  132 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHP-----LTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGY--GTCYAGAPSGPAP 269
The following BLAST results are available for this feature:
BLAST of NK2a homeodomain transcription factor protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX265.521e-2643.45Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6... [more]
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