TCONS_00016170-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016170-protein
Unique NameTCONS_00016170-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016170-protein ID=TCONS_00016170-protein|Name=TCONS_00016170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MAEILSRQYVSVFSAPKPFDIIQSENDEVNVDIISDLQVTEDDLIKAIND
LSQTAAPGPDGFPATFLKQCKEELSIPLCILWRQSLDKGIVPDEVKRCTI
TPIHKGGSRSLASNYRPVALTYHVIKIFEKVLRAHIVKHMDENNLFNPNQ
HGFRSWRSCLSQLLEQYDLILNILDEGANADVVYLDFSKAFDKVDHSIVL
RKIKKLGIDGKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009030XLOC_009030Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016170TCONS_00016170Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 108..212
e-value: 6.2E-5
score: 22.2
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 97..208
e-value: 2.45092E-29
score: 108.918
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 32..208
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 103..210
e-value: 1.0E-14
score: 54.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 84..212
score: 9.265

Blast
[Close]
BLAST of TCONS_00016170-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.767e-18
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0 
Query:   39 VTEDDLIKAINDLSQTAAPGPDGFPATFLKQCKEELSIPLCILWRQSLDK-GIVPDEVKRCTITPIHKGGSRSL-ASNYRPVALTYHVIKIFEKVLRAHIVKHMDENNLFNPNQHGFRSWRSCLSQLLEQYDLILNI-LDEGANADVVYLDFSKAFDKVDHSIVLRKIKKLGIDG 210
            +T  +++  IN L    +PGPDGF A F ++ KEEL +P  +   QS++K GI+P+     +I  I K G  +    N+RP++L     KI  K+L   I +H+ +  L + +Q GF         + +  ++I +I   +  N  ++ +D  KAFDK+    +L+ + KLGIDG
Sbjct:  453 ITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL-VPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDG 624
The following BLAST results are available for this feature:
BLAST of TCONS_00016170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF21.767e-1832.57LINE-1 retrotransposable element ORF2 protein OS=H... [more]
back to top